UFO05093.5prime Sequence
1092 bp (987 high quality bases) assembled on 2009-06-30
> UFO05093.5prime
CAGTCGACATGCTCTCCGCCACACACACGCGGTCAACGTTTTCTCCGCTT
TGTGGCGCCGCGCAAGTTTTGTCGCAGCAGCAAACACGCAATAAAAGTTC
AAAAACAGTTGAAGTATACCGCGACGCGAGTAAAAATCTTTCCTTCGACG
TCGTCTCTGTTCGTTGTAGTAGTTGTTGTTGCTGCTGTTGTTCTTGTTGC
TGCTACTGCCGCTGCTTAACGTTTCTAGCAAGCTTTCTAGACCATTCGTT
TGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATC
ATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTC
TCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAG
ATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGC
TCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAA
TTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAA
CCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTG
CCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAA
ATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATAT
TCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCC
ACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTC
ACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAAC
AAGGGTGAACACTATCCCATATCACCAGCTCACCGTCTTTCATTGCCATA
CGAAATTCCGGATGAGCATTCATCAGCGGGCAAGAATGTGAATAAAGGCC
GGATAAACTGGTGCTTATTTTTTCTTTACGTCTTTAAAGCGTAATATCAG
CTGAACGGTCTGGTTATAGTACATGAGCACTGACTGAAATGCCTCAAAGG
TTCTTACATGCAATGGAATATCACGGCATTCAATGATTTTTC
UFO05093.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:54:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lawc-RA | 1072 | CG32711-RA | 124..343 | 8..227 | 1100 | 100 | Plus |
| lawc-RB | 1332 | CG32711-RB | 124..343 | 8..227 | 1100 | 100 | Plus |
| lawc-RD | 1870 | CG32711-RD | 124..343 | 8..227 | 1100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:54:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8409756..8409975 | 227..8 | 1100 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 21:54:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 796..863 | 123 | 68.1 | Plus |
UFO05093.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:15:19 Download gff for
UFO05093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32711-RA | 116..340 | 1..227 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:20 Download gff for
UFO05093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lawc-RD | 119..343 | 1..227 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:27 Download gff for
UFO05093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lawc-RD | 119..343 | 1..227 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 22:44:27 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-05 00:44:20 has no hits.
