UFO05103.5prime Sequence
1015 bp (-103 high quality bases) assembled on 2009-06-30
> UFO05103.5prime
CAGTCGAATGTCGCCCTACTTTGACCAACAAGAACGTGATTTTCGTTGCC
GGTCTGGGAGGCATTGGTCTGGACACCAGCAAGGAGCTGCTCACGCGCGA
TCTGAAGAACCTGGTGATCCTCGACCGCATTGAGAACCCGGCTGCCATTG
CCGAGCTGAAGGCAATCAATCCAAAGGTGACCGTCACCTTCTACCCCTAT
GATGTGACCGTGCCCATTGCCGAGACCACCAAGCTGCTGAAGACCATCTT
CGCCCAGCTGAAGACCGTCGATGTCCTGATCAACGGAGCTGGTATCCTGG
ACGATCACCAGATCGAGCGCACCATTGCCGTCAACTACACTGGCCTGGTC
AACACCACGACGGCCATTCTGGACTTCTGGGACAAGCGCAAGGGCGGTCC
CGGTGGTATCATCTGCAACATTGGATCCGTCACTGGATTCAATGCCATCT
ACCAGGTGCCCGTCTACTCCGGCACCAAGGCCGCCGTGGTCAACTTCACC
AGCTCCCTGGCGAAACTGGCCCCCATTACCGGCGTGACGGCTTACACTGT
GAACCCCGGCATCACCCGCACCACCCTGGTGCACACGTTCAACTCCTGGT
TGGATGTTGAGCCTCAGGTTGCCGAGAAGCTCCTGGCTCATCCCACCCCA
GCCCTCGTTGGCCTGCGCCGAGAACTTCGTCAAGGCTATCGAGCTGACCA
GAACGGAGCCCATCTGGAAACTGGACTTGGGCACCCTGGAGGCCATCCAG
TGGACCAAGCACTGGGACTCCGGCATCGCAAGCTTTCTAGACCATTCGTT
TGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATATTCATAATCATAATC
ATAATCACAACTAGCTAGGAGATCCTGGTCATGACTAGTGCTTGATTCTC
ACCAATAAAAACGCCCGGCGCAACCGAGCGTTTCTGAACAATCAGATGAA
TTCTTGAGTTCATTACTGATTCTTCAACCGGAATTCTAGCGAAGCCTCAA
TATCAAATTACGACC
UFO05103.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Adhr-RB | 2024 | CG3484-RB | 81..840 | 17..777 | 3720 | 99.5 | Plus |
| Adhr-RA | 2080 | CG3484-RA | 137..896 | 17..777 | 3720 | 99.5 | Plus |
| Adh-RE | 1001 | CG3481-RE | 81..840 | 17..777 | 3720 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14616501..14616907 | 106..512 | 2035 | 100 | Plus |
| 2L | 23513712 | 2L | 14616977..14617241 | 512..777 | 1185 | 98.9 | Plus |
| 2L | 23513712 | 2L | 14616347..14616437 | 17..107 | 440 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:37:16 has no hits.
UFO05103.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:14:21 Download gff for
UFO05103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adh-RH | 71..842 | 8..782 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:00 Download gff for
UFO05103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adh-RH | 73..844 | 8..782 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:11 Download gff for
UFO05103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adh-RE | 73..844 | 8..782 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:11 Download gff for
UFO05103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14616978..14617245 | 513..782 | 98 | == | Plus |
| 2L | 14616503..14616907 | 108..512 | 100 | -> | Plus |
| 2L | 14616339..14616437 | 8..107 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:00 Download gff for
UFO05103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14616339..14616437 | 8..107 | 96 | -> | Plus |
| arm_2L | 14616503..14616907 | 108..512 | 100 | -> | Plus |
| arm_2L | 14616978..14617245 | 513..782 | 98 | == | Plus |
