UFO05106.5prime Sequence
1042 bp (-101 high quality bases) assembled on 2009-06-30
> UFO05106.5prime
CAGTCGACATGTTCGATAATTTGCGAGGTATTTTTCGGAAACGGGGTCAC
TGCGAGTCGGACACGACACCGCCGGGACCGCCGCCGCAACCCCCCCAGGA
GGCGGAGATAATAAACCGATATCCGGAAGATATTTAAGCCGATACGCCCG
AGTCCAATGATGGCTTTGACGCCTCCTGGACCGAAGGCTCTTTTCACAGC
CCACATTCAGATAGACCATTTAACGCCAGCGAGAGATTTGTCACCATACT
GGATAGTTTGGATGCACGTGTGGAGAAGCTGCGCAAGGATGCACTCAACC
TGCAGGAGAAGAAAGACTACCTTCTGATGTCCATGGATCTGATCAAGAGC
AACTAGGTGATGCAAAACATGAGCGAAGCTGAACGAGAGGAGATCATTTT
GTACCTACAACGGGTGAGCTCTCGCTTGGCCACCGTGGAGCTGCGTGTGC
GCACTGTTCGGGACAACTCTCAGGAGGATTCCCTTAGCCAGATAAATGTA
TTGATTGACAGCATGATCAAGATGGGTGATCCCGTGATCGGACGCCAACG
ATGCCAGTTTTACTTAAACGCCTGCTGCAGCAGCTCAATGGATCCATCCG
GACACATGGACACCGTGCCCGGAGGCCGATGTTGGGCCGGTCGACAAGAA
GTTCGAGAGCGTTTTGCTTGGCTGCACTCTGGACGATTCAGAAGAACATC
AAGAAGCGGCTCCAGGCCTTAATGGCTTATCTGAATAGCAAACTGTTAGC
CATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGG
TCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGAT
CCTGGTCATGACTAGTGCTTGGATTCTCACCATTAATAAACCGCCCGGCG
GCACCGAGCGTTTCTGACCAAATCCCGATGGAGTTCTGAAGGTCATTACT
GGCTCTATCCACAGGAGCCCAAGCGAGCCTCGAATAATCAAATTACGCCC
CGGCCCTGCCCATCACGCAGTACTGTTGTATTCATTTAGCAT
UFO05106.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:09:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7945-RB | 1275 | CG7945-RB | 421..1164 | 9..753 | 3430 | 97.6 | Plus |
| CG7945-RA | 1451 | CG7945-RA | 801..1340 | 213..753 | 2575 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:09:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15521822..15522197 | 753..377 | 1740 | 99.2 | Minus |
| 3L | 28110227 | 3L | 15523512..15523717 | 214..9 | 865 | 94.7 | Minus |
| 3L | 28110227 | 3L | 15522360..15522504 | 378..234 | 665 | 97.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:09:08 has no hits.
UFO05106.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:14:24 Download gff for
UFO05106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7945-RB | 381..1131 | 6..761 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:10 Download gff for
UFO05106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7945-RB | 419..1169 | 6..761 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:16 Download gff for
UFO05106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7945-RB | 419..1169 | 6..761 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:16 Download gff for
UFO05106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15521817..15522195 | 379..761 | 98 | <- | Minus |
| 3L | 15522360..15522502 | 236..378 | 97 | <- | Minus |
| 3L | 15522560..15522580 | 215..235 | 100 | <- | Minus |
| 3L | 15523512..15523719 | 6..214 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:10 Download gff for
UFO05106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15514917..15515295 | 379..761 | 98 | <- | Minus |
| arm_3L | 15515460..15515602 | 236..378 | 97 | <- | Minus |
| arm_3L | 15515660..15515680 | 215..235 | 100 | <- | Minus |
| arm_3L | 15516612..15516819 | 6..214 | 94 | | Minus |
