Clone UFO05116 Report

Search the DGRC for UFO05116

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:51
Well:16
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG33695-RF
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO05116.5prime Sequence

607 bp (-106 high quality bases) assembled on 2009-06-30

> UFO05116.5prime
CAGTCGACATGCAGCTGCATCCCAATGCGGAGTCGCCATCGGGGAAGTGG
ACGGACGAGGAGATCGACATGCTGGACTCGTCCATAATGCGCTTCTCCGA
CGACCTGACCAAGATCAGCCTAAGCATCAAGAACCGCACCGTTTCTCAGA
TCCGCCAGGCGCTGAAGAAGAAGGCCTTCGAGGACGCCGGCATTCCCGCC
AAGCAAGTGCCCGTCCAGCAGGTGCAACACGTTCTCCAGACGCTGCCACA
ACAGCAGCCGCAGTAGCCCCTTCAGCAGCCACCTCCTCAAGTATTCAAGT
CACAGCCAATCGTGCAGCACGTACACCTGGTGGCGCAGCCAAAGCAGATC
ATCCTGCATCCACAGTCTAATACAACTACCACGGGCACGACGGTGACTGT
TAAGCAGTACCAGCAGATGCATAATGCTGCGGCATTAGCGGCAGCCCAGG
CTGCATCCTCGACGGCCTACAACACGCCCACGATCACGGAGAACATCATT
ATCCAGCAGCCCACTTCGACTACGGCGATAGTGGTGCTTCAGCCACATAT
GGTGTCCACTGCTCGTCGACGCAATCGTGGGGCCCGTTGTGTCAGCATGT
CCACTGT

UFO05116.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG33695-RE 1394 CG33695-RE 167..769 8..607 2730 97.2 Plus
CG33695-RF 1456 CG33695-RF 229..831 8..607 2730 97.2 Plus
CG33695-RD 1300 CG33695-RD 208..675 143..607 2070 96.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11278755..11279222 143..607 1995 96.6 Plus
2L 23513712 2L 11278574..11278673 43..142 485 99 Plus
2L 23513712 2L 11278450..11278486 8..44 185 100 Plus
Blast to na_te.dros performed 2014-11-28 20:55:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6740..6896 216..379 165 57.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..7028 217..523 163 54.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6809..6939 216..346 160 58 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6925 242..447 145 56.9 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 92..194 179..279 141 61.2 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9122..9224 179..279 141 61.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2373 216..279 131 67.2 Plus
roo 9092 roo DM_ROO 9092bp 1067..1108 237..278 129 78.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6761..6827 216..282 128 65.7 Plus
roo 9092 roo DM_ROO 9092bp 1091..1168 216..292 117 62.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2808..2958 237..397 115 57.4 Plus

UFO05116.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:35:35 Download gff for UFO05116.5prime
Subject Subject Range Query Range Percent Splice Strand
cana-RA 6760..7362 8..607 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:19 Download gff for UFO05116.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33695-RF 229..831 8..607 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:33 Download gff for UFO05116.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33695-RF 229..831 8..607 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:33 Download gff for UFO05116.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 11278450..11278485 8..43 100 -> Plus
2L 11278575..11278673 44..142 98 -> Plus
2L 11278755..11279222 143..607 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:19 Download gff for UFO05116.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11278450..11278485 8..43 100 -> Plus
arm_2L 11278575..11278673 44..142 98 -> Plus
arm_2L 11278755..11279222 143..607 96   Plus