UFO05116.5prime Sequence
607 bp (-106 high quality bases) assembled on 2009-06-30
> UFO05116.5prime
CAGTCGACATGCAGCTGCATCCCAATGCGGAGTCGCCATCGGGGAAGTGG
ACGGACGAGGAGATCGACATGCTGGACTCGTCCATAATGCGCTTCTCCGA
CGACCTGACCAAGATCAGCCTAAGCATCAAGAACCGCACCGTTTCTCAGA
TCCGCCAGGCGCTGAAGAAGAAGGCCTTCGAGGACGCCGGCATTCCCGCC
AAGCAAGTGCCCGTCCAGCAGGTGCAACACGTTCTCCAGACGCTGCCACA
ACAGCAGCCGCAGTAGCCCCTTCAGCAGCCACCTCCTCAAGTATTCAAGT
CACAGCCAATCGTGCAGCACGTACACCTGGTGGCGCAGCCAAAGCAGATC
ATCCTGCATCCACAGTCTAATACAACTACCACGGGCACGACGGTGACTGT
TAAGCAGTACCAGCAGATGCATAATGCTGCGGCATTAGCGGCAGCCCAGG
CTGCATCCTCGACGGCCTACAACACGCCCACGATCACGGAGAACATCATT
ATCCAGCAGCCCACTTCGACTACGGCGATAGTGGTGCTTCAGCCACATAT
GGTGTCCACTGCTCGTCGACGCAATCGTGGGGCCCGTTGTGTCAGCATGT
CCACTGT
UFO05116.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33695-RE | 1394 | CG33695-RE | 167..769 | 8..607 | 2730 | 97.2 | Plus |
CG33695-RF | 1456 | CG33695-RF | 229..831 | 8..607 | 2730 | 97.2 | Plus |
CG33695-RD | 1300 | CG33695-RD | 208..675 | 143..607 | 2070 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11278755..11279222 | 143..607 | 1995 | 96.6 | Plus |
2L | 23513712 | 2L | 11278574..11278673 | 43..142 | 485 | 99 | Plus |
2L | 23513712 | 2L | 11278450..11278486 | 8..44 | 185 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:55:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6896 | 216..379 | 165 | 57.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..7028 | 217..523 | 163 | 54.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6939 | 216..346 | 160 | 58 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6925 | 242..447 | 145 | 56.9 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 92..194 | 179..279 | 141 | 61.2 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9122..9224 | 179..279 | 141 | 61.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2373 | 216..279 | 131 | 67.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1067..1108 | 237..278 | 129 | 78.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6827 | 216..282 | 128 | 65.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1091..1168 | 216..292 | 117 | 62.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2808..2958 | 237..397 | 115 | 57.4 | Plus |
UFO05116.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:35:35 Download gff for
UFO05116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cana-RA | 6760..7362 | 8..607 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:19 Download gff for
UFO05116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33695-RF | 229..831 | 8..607 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:33 Download gff for
UFO05116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33695-RF | 229..831 | 8..607 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:33 Download gff for
UFO05116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11278450..11278485 | 8..43 | 100 | -> | Plus |
2L | 11278575..11278673 | 44..142 | 98 | -> | Plus |
2L | 11278755..11279222 | 143..607 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:19 Download gff for
UFO05116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11278450..11278485 | 8..43 | 100 | -> | Plus |
arm_2L | 11278575..11278673 | 44..142 | 98 | -> | Plus |
arm_2L | 11278755..11279222 | 143..607 | 96 | | Plus |