UFO05117.5prime Sequence
1054 bp (868 high quality bases) assembled on 2009-06-30
> UFO05117.5prime
CAGTCGACATGGAGAGCTTTGCAGTACCAGCCGCGCAACTGGGGCCACAC
TTTGCCCCCCTGTCCAATGGATCGGTGGTGGACAAGGTCACGCCCGACAT
GGCCCACCTGATCAGCCCGTACTGGAACCAGTTCCCCGCCATGGACCCCA
TTTGGGCCAAGATCCTGACCGCCTACATGATCATGATCGGCATGATTTCC
TGGTGCGGAAATGGCGTGGTGATCTACATATTCGCCACCACCAAATCACT
GCGCACGCCCGCTAACCTGCTGGTCATCAACCTGGCCATCTCCGACTTTG
GCATCATGATCACAAACACGCCCATGATGGGCATAAATCTGTATTTCGAG
ACCTGGGTGCTCGGACCCATGATGTGCGACATATACGCCGGACTGGGCTC
GGCCTTTGGCTGCAGCTCCATCTGGTCCATGTGCATGATCTCCCTGGATC
GCTACCAAGTGATCGTCAAGGGCATGGCCGGCCGGCCGATGACCATTCCG
CTGGCCCTGGGCAAGATTGCCTACATCTGGTTCATGTCGAGCATTTGGTG
CCTGGCGCCCCGCCTTCGGCTGGAGCAGGTATGTGCCGGAGGGTAACCTG
ACCTCGTGCGGTATTGACTACTTGGAACGCGACTGGAACCCACGCTCATA
CCTGATCTTCTACTCCATCTTCGTGTACTATATTCCGCTGTTCCTGATCT
GCTACTCTTACTGGTTCATCATTGCTGCTGTCTCCGCCCACGAGAAAGCC
ATGCGCGAGCAGGCCAAGAAGATGAATGTCAAGTCCCTCCCGCTCCTCTG
AGATGCCGAGAAGAGCGCCGAGGGCCAGCTGGCCAAGGTGGCTCCTGGTC
ACATCACGCTGTGGTCATGCCGTGACACATCCTGGTCATCACTGCATGTG
ACTGTTCAGTTCGAGGCCTACACACTGAATACCATTGGGCAGCTTGCTTC
GCCATTCGGCCGCTGCCTACATCCAATGAATACGGCATCACCATCCGAAA
TATCGCCCTGACCTCCAGGAACTAGTGGTCCCTTGCTGGCTCTTTGGAAG
GGCG
UFO05117.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ninaE-RA | 1588 | CG4550-RA | 177..1201 | 9..1020 | 4440 | 96.8 | Plus |
| Rh2-RA | 1365 | CG16740-RA | 272..911 | 204..844 | 495 | 72.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19887397..19887961 | 580..15 | 2765 | 99.6 | Minus |
| 3R | 32079331 | 3R | 19887075..19887225 | 727..577 | 755 | 100 | Minus |
| 3R | 32079331 | 3R | 19886879..19887017 | 865..727 | 480 | 92.9 | Minus |
| 3R | 32079331 | 3R | 18899790..18900429 | 204..844 | 410 | 71.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:40:44 has no hits.
UFO05117.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:35:38 Download gff for
UFO05117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaE-RA | 173..1201 | 1..1020 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:33 Download gff for
UFO05117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaE-RA | 173..1201 | 1..1020 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:37 Download gff for
UFO05117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaE-RA | 173..1201 | 1..1020 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:37 Download gff for
UFO05117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19887076..19887223 | 579..726 | 100 | <- | Minus |
| 3R | 19887399..19887961 | 15..578 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:33 Download gff for
UFO05117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15712798..15712945 | 579..726 | 100 | <- | Minus |
| arm_3R | 15713121..15713683 | 15..578 | 99 | | Minus |
