UFO05118.5prime Sequence
1126 bp (933 high quality bases) assembled on 2009-06-30
> UFO05118.5prime
CAGTCGACATGATCGGCAGGACGGCTTTGGATGCGGTGACGCAGGCGCCG
GGAGAGGTGATTGTGGCCACCAAGCCCAAGATCCTCTTCTGCGACCTGCG
CCTCCAGCCTGGAGAGACCAAGATGTACTTTTTCAATGAATTCATTCCCC
GCGATGGCCCACCCACGTACAGAGGCCACAACATCCGGTACTTCTACAAG
ATCACCATTGCTACGCAACGGGTCAAGTCCAAGGTGCAAACGCTGGCCGT
TCCCATCCGGGTGTTGCCAATTCCCATAATTTCGCGGCCCGACGAACTTC
CCGTAACCGTAGAGACCAACGAAGAGCTGGCGCCCACTAATCCGTTCCTG
GAAAAGCGCGAGATCAGCGAGCTTGAGATATCGTGGCACCACCTTAAGAA
CGTAACCGCTCGGCGGGCGCCGAAGTTCTACCGCATCTCGAACAAACGCG
GCTTCGTTGGCCGCTTTTGTTTGTTCAAGCCAGCGTATAAGCTCGGTGAG
GACATTGTGGGCAGCCTGGACTTTGATCCCGGCGTTAACCCCCGAAAGGT
GCGCTGCGTCCAGTTTTCGGTAAAGCTGCAGCAGCAGGAGCTTTCCATCC
GACCGCAACCAGTGCAAAATCACCAGCTGCAGTCGCAATCCTCGACGGGC
GATGATGTCTCCTCGATGAACTCCTTTGATATGGCCAGCATAGCTAGCGG
AGTGTTGGCAGATAACCTCCACAAGTCGGCCACATCCGGCTAGCTCAAAG
GTTAAGGAGGCGCCTGAGCCAACCGGTAAAACTTTCGACCATTTCCACCT
CCCACCAAGTGTGCTACGCAACGCTGCAGACCCAGGTCGTGTACCCCATT
TCGCTGCACGTAACACCAACATTCCGCACAGACCTCGTCGACGTGCGATG
GCGATTGCATTTCGAGTTTGTGACCACACTTTGATTGACTTTGGCATTCC
GAATCGGAGTCCGCGGAGCTAAAACAACCGTCTGAAATGCCGTGGAGACG
ATGGTATGGGATTCTGCCCGTGACCGTCTACGCTGCGAATCCTCTTCAGA
ATTTATGCTCTCAAACAGACATCACCTGCTTATAAAAGCAGCCTTTCTAA
ACATTCCGTGGGCGCGCGGGCCAGGT
UFO05118.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1116-RD | 1639 | CG1116-RD | 300..1378 | 9..1086 | 4965 | 98 | Plus |
| CG1116-RA | 1570 | CG1116-RA | 297..1375 | 9..1086 | 4965 | 98 | Plus |
| CG1116-RB | 1633 | CG1116-RB | 360..1438 | 9..1086 | 4965 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5220747..5221271 | 547..1072 | 2070 | 95.8 | Plus |
| 3R | 32079331 | 3R | 5220199..5220470 | 127..398 | 1360 | 100 | Plus |
| 3R | 32079331 | 3R | 5220534..5220687 | 397..550 | 770 | 100 | Plus |
| 3R | 32079331 | 3R | 5220016..5220133 | 9..126 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:37:00 has no hits.
UFO05118.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:35:39 Download gff for
UFO05118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1116-RC | 279..1364 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:47 Download gff for
UFO05118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1116-RB | 353..1438 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:02 Download gff for
UFO05118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1116-RB | 353..1438 | 1..1086 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:02 Download gff for
UFO05118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5220009..5220133 | 1..126 | 96 | -> | Plus |
| 3R | 5220199..5220470 | 127..398 | 100 | -> | Plus |
| 3R | 5220536..5220685 | 399..548 | 100 | -> | Plus |
| 3R | 5220749..5221287 | 549..1086 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:47 Download gff for
UFO05118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1045731..1045855 | 1..126 | 96 | -> | Plus |
| arm_3R | 1045921..1046192 | 127..398 | 100 | -> | Plus |
| arm_3R | 1046258..1046407 | 399..548 | 100 | -> | Plus |
| arm_3R | 1046471..1047009 | 549..1086 | 95 | | Plus |
