UFO05119.5prime Sequence
1045 bp (841 high quality bases) assembled on 2009-06-30
> UFO05119.5prime
CAGTCGACATGACAATGGGCGAGCCCACGTCGTCTCTCGTTCTGCCCGTC
ATACTGCGGCCCATTTTCTCCCAGCTCGAGCGACGCGACGTTGGCGCTGC
CCAATCTCTGCGCTCCGCCATTCTCAAGTCGGAGCAGAACAATCCGGGCT
TCTGCTATGACCTCGTAGCCACAATTGTGCGGCGGGCCGATCTGAATGTT
AACCTAAACGAGGCCGTGCTCCGATTGCAGGGCAAAATTACGGAAGCGGA
CCTCAATGAATACCGCTTGACGCGCACGGAGGAGCCCTTCCAGGAGCTCA
ATCGTAAGTCCGTGGCTCTCAAGGTGATCCTCAGCCGCATACCCGATGAG
ATAAACGACAGGAAGACCTTCCTGGAGACCATCAAGGAAATCGCCAGCGC
CATAAAGAAACTACTCGATGTGGTCAACGAGATCGGCTCGTTTATACCTG
GCGTAACGGGCAAGCAGGCTGTGGAGCAGCGTAAGAAGGAGTTCGTCAAA
TATTCCAAGAAGTTCAGCACAACGCTGAAGGAGTACTTCAAAGAAGGACA
ACCGAATGCAGTATTCATAAGTGCACTTTTTCTAATACGGCAAACGAATC
AAATAATGCTGACAGTTAAGAGTAAATGCGAGGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGGAGATCCTGCGTCATGACTAGTGCTT
GGATTCTCACCAATAAAAAACGCCCGGCGGCCAACCTGAGCGTTCTGAAC
AAATCCAGATGGAGTTCTTGAGGTCATTACTGGATCTATCACAAGGAGTC
CAAGCGAGCTCGATATCAAATTACGCCCCGGCCTGCCACTCATCGCAGTA
CGTGTAATTCATTAAGCATTCTGCGACATGGAAGCCATCACAACGGCATG
ATGAACCTGATTGCCGCGCATCAGCACCTTGTCGCCTTGCTATTATATTT
GGCCATGGGGAAACGGGGCGAAAAATTTGCCAATTGGCCCGGTTC
UFO05119.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:53:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ccm3-RA | 1589 | CG5073-RA | 196..819 | 9..632 | 3120 | 100 | Plus |
| CG6136-RD | 2071 | CG6136-RD | 1..61 | 69..9 | 305 | 100 | Minus |
| CG6136-RC | 2177 | CG6136-RC | 1..61 | 69..9 | 305 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:53:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15372392..15372572 | 72..252 | 905 | 100 | Plus |
| 3R | 32079331 | 3R | 15372849..15373013 | 386..550 | 825 | 100 | Plus |
| 3R | 32079331 | 3R | 15372631..15372764 | 253..386 | 670 | 100 | Plus |
| 3R | 32079331 | 3R | 15373386..15373467 | 551..632 | 410 | 100 | Plus |
| 3R | 32079331 | 3R | 15372152..15372217 | 9..74 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:53:09 has no hits.
UFO05119.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:35:40 Download gff for
UFO05119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5073-RA | 185..817 | 1..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:31 Download gff for
UFO05119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5073-RA | 187..819 | 1..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:46 Download gff for
UFO05119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccm3-RA | 187..819 | 1..632 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:46 Download gff for
UFO05119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15372143..15372217 | 1..74 | 94 | -> | Plus |
| 3R | 15372395..15372572 | 75..252 | 100 | -> | Plus |
| 3R | 15372631..15372763 | 253..385 | 100 | -> | Plus |
| 3R | 15372849..15373013 | 386..550 | 100 | -> | Plus |
| 3R | 15373386..15373467 | 551..632 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:31 Download gff for
UFO05119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11197865..11197939 | 1..74 | 94 | -> | Plus |
| arm_3R | 11198117..11198294 | 75..252 | 100 | -> | Plus |
| arm_3R | 11198353..11198485 | 253..385 | 100 | -> | Plus |
| arm_3R | 11198571..11198735 | 386..550 | 100 | -> | Plus |
| arm_3R | 11199108..11199189 | 551..632 | 100 | == | Plus |
