UFO05122.5prime Sequence
926 bp (504 high quality bases) assembled on 2009-06-30
> UFO05122.5prime
CAGTCGACATGAGTGACCAAAAAACAGTAAATTTGCTGTGGAACTGTGCC
TCCAAGCTGACCGACCAAACCCACACAGAACGGATCCTCAAATCCTATTA
CATAACCACCTGTAGGAAGCTGGCCCGGCACAATGTCCAGTTGCCCGAGG
AGAGCTTTGGACCCGCACGCATGTGCTCCCGCTGCGGGAACCAGTGGACA
GGTGGCCGCTACCAGCTCTACCTCCAGCCACAAGAACTGATGCAGAGTGC
TAAGAACCGGAGACTGATCACCAAGCTGGAAGCCGTGAAGGGCAAGATGG
CAAAGGGCGAGATGAACAGCGGGGCCAGGAAACGGGCCAAGTGGCTCAAG
AAGCGTATGGCCAGTAACATGGCCGCGGACTGCGATGTTTGCCATCACAA
GACAATGTTGGCTCTGGAGAAGAGCCGAAAGCGCGCCAAAGTAAAAGCCA
CGGAGGAGACAATGGTAGTCACACAACCTGCGCCAGCGGGCCAAAACAAA
AAGAAGGCCAAAAACGAAGAAGTCTCAGGCGCCGGATAAAAGATATCTAT
GCAGGCCTGAAAAATGCAGCAAAAAGCGCCCTCAGCGACAGCAGCAGCCT
TTCGAAATCGCCAGCTCCATCCAAAAACGCGTCCCCAACCAGGCGGGCAT
AGCTTCCCAAAAACCCAAGTCAGACATCGAAAGAAGAAAAATAAGAAACC
CTGCCCACCCAGCGCCCACCGCAACCAAAAACGCAGTCCAAAACCCAGAA
GCAGACCGTACTGCTGCAAATAGCTGCCCACTTGAGGTCCAACGTGTTTA
AAGACGCCAGCAAACGCAGCATAATCCGCCTCCAAGCGTTCTTCAAGGCA
AGCTTTCTAGACCATTCCGTTTGGGCGCGGCGGGTCCTGGTAAGTGTCCT
AATCATAATTCTTATCCTGATGCTTA
UFO05122.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1360-RA | 1757 | CG1360-RA | 195..1023 | 8..847 | 3640 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7588507..7588972 | 847..371 | 1515 | 94.1 | Minus |
| 2R | 25286936 | 2R | 7589266..7589534 | 372..104 | 1330 | 99.6 | Minus |
| 2R | 25286936 | 2R | 7589595..7589690 | 103..8 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:51:23 has no hits.
UFO05122.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:14:26 Download gff for
UFO05122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1360-RA | 185..1024 | 1..853 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:16:14 Download gff for
UFO05122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1360-RA | 188..1027 | 1..853 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:58 Download gff for
UFO05122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1360-RA | 188..1027 | 1..853 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:58 Download gff for
UFO05122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7589595..7589697 | 1..103 | 97 | | Minus |
| 2R | 7588503..7588971 | 372..853 | 93 | <- | Minus |
| 2R | 7589267..7589534 | 104..371 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:16:14 Download gff for
UFO05122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3476008..3476476 | 372..853 | 93 | <- | Minus |
| arm_2R | 3476772..3477039 | 104..371 | 99 | <- | Minus |
| arm_2R | 3477100..3477202 | 1..103 | 97 | | Minus |
