UFO05123.5prime Sequence
932 bp (844 high quality bases) assembled on 2009-06-30
> UFO05123.5prime
CAGTCGACATGGTGGCCTTCCAATTGTTCAACGAAATCGGCAGTATTTTC
CGAAACACCCCCACGTTTGCTCTCGTCTTGGAGACCCTACTGCTCATAAC
CGTGATTTGGTTGCTGCTCCACAGACGAGGAGGAGGTCGTCGCCGACAGC
TGACCAAGGAGGAGGAAGACCGAATAATCGCCGACTATGAACCAGAGCCC
TTGGTGGCCGACACCGATCCCAATCATCCCCTGCTGCACACCCGCGTTGT
GCAGTCCAGGGTGGGCAAGCGCATCCAGGTCGATGGACACGACTGCCTAA
ATCTTGGCTCTCACAACTATCTTGGCTTCCTCGAGGACCAGGAGATACTG
GAGGAGGCCTGCAAGTCGCTGCGCAAGTACGGAGTTGGATCTTGCGGACC
TCGGGGCTTCTACGGCACTATGGACGTGCATCTGGACCTGGAGGATCGTA
TTGCCAAGTTCATGGGCCTGGAGGAGGCCATTGTCTATTCCTACGGCTTC
TCGACCGTAGGCAGTGCCATTCCGGCGTATGCCAAACGTGGCGACCTTAT
CTTTGTGGATGAGGCTGTCAACTTTGCCATTCAGAAGGGTCTGGATGCTT
CACGAAGCACAATCGTTTTCTTTAAGCACAATGACGTTGAGGATCTAGAA
CGTCTGCTGATTGAGCAAGAAAAACGAGACCACAAAAATCCGAAAAAGGC
GGCTAAGACACGTCGCTTCCTCGTCGCCGAGGGTATCTATATGAATACGC
GGCGAGATTTGCCCACTTTCCCGACCCTGGTGGCCTTGCGTCAGAAGTAC
AAGCTGCGTTTGTTCATCGACGATAGCATCTCCTTTGCCACATTGTGCCA
GGGTGGTCACGGAGCTACGGAGCACTTTATTGTCGATCGTCATGAAATCC
GATCTGAATCCGGCCGGAATGGATGGGATCCA
UFO05123.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spt-I-RC | 1769 | CG4016-RC | 100..1010 | 9..923 | 4250 | 98 | Plus |
| Spt-I-RA | 1727 | CG4016-RA | 58..968 | 9..923 | 4250 | 98 | Plus |
| Spt-I-RB | 1799 | CG4016-RB | 130..1040 | 9..923 | 4250 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13168951..13169451 | 57..557 | 2475 | 99.6 | Plus |
| 2R | 25286936 | 2R | 13169507..13169834 | 557..887 | 1415 | 97.3 | Plus |
| 2R | 25286936 | 2R | 13168841..13168888 | 9..56 | 225 | 97.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:38:08 has no hits.
UFO05123.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:14:33 Download gff for
UFO05123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spt-I-RC | 90..1011 | 1..927 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:32 Download gff for
UFO05123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spt-I-RB | 122..1043 | 1..927 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:35 Download gff for
UFO05123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spt-I-RB | 122..1043 | 1..927 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:35 Download gff for
UFO05123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13168833..13168888 | 1..56 | 92 | -> | Plus |
| 2R | 13168951..13169450 | 57..556 | 99 | -> | Plus |
| 2R | 13169507..13169836 | 557..890 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:32 Download gff for
UFO05123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9056338..9056393 | 1..56 | 92 | -> | Plus |
| arm_2R | 9056456..9056955 | 57..556 | 99 | -> | Plus |
| arm_2R | 9057012..9057341 | 557..890 | 97 | | Plus |
