UFO05125.5prime Sequence
517 bp (-106 high quality bases) assembled on 2009-06-30
> UFO05125.5prime
CAGTCGACATGGCTGGCTTCAAGAGCCCCGACAGAATCACTCCGTTGCCA
TTCAACAATGGCGAGGAGTACCTGAGACTTCTGCGCGAGGCCCACCGCGA
GTCGAACCAGTCGAGCCGTGTCGTCTCCTTGGCCAGCTCCCGTCGTGATA
CGCCCCGTGATAGCCCCAAGAGTCCACCGAACAGTCCCCAGTCGGAGCTC
TGTCCGGATGATGAGCTCAGAAACTTGTACATCAACTACTGGACCAAGGG
AGGAGACAAACAGAATGCAGGTTATGAAGATTGGCTGAAGAACTGGAATC
ACCCACCCAGTAGCTGGAACATTGAGGATTCAAGTCGGGATGCCGGCCAC
GAGGGTTATAAGAAGAAAACTAACACAGGCTACTCCATCCGTTTGAAGCG
ACTGGGCTCAACTCGTTGTTCTCCCGCGAAATTCTGTCTCGCTGCTGGTG
ACCACGTCCTGTCCCTGCTGCTGGGAGCTGGATTCGGGCTATGGTTCAGC
AGCGTGGCATACTCTTT
UFO05125.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5059-RE | 1543 | CG5059-RE | 276..785 | 9..514 | 2255 | 96.7 | Plus |
| CG5059-RD | 1477 | CG5059-RD | 210..719 | 9..514 | 2255 | 96.7 | Plus |
| CG5059-RB | 1344 | CG5059-RB | 77..586 | 9..514 | 2255 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20515853..20516100 | 256..9 | 1165 | 98 | Minus |
| 3L | 28110227 | 3L | 20515443..20515626 | 488..308 | 680 | 95.1 | Minus |
| 3L | 28110227 | 3L | 20515725..20515788 | 310..247 | 275 | 95.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:37:13 has no hits.
UFO05125.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:35:44 Download gff for
UFO05125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RA | 490..1010 | 1..517 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:57 Download gff for
UFO05125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RB | 69..589 | 1..517 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:10 Download gff for
UFO05125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RB | 69..589 | 1..517 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:10 Download gff for
UFO05125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20515444..20515623 | 311..487 | 95 | <- | Minus |
| 3L | 20515725..20515786 | 249..310 | 95 | <- | Minus |
| 3L | 20515861..20516105 | 1..248 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:57 Download gff for
UFO05125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20508544..20508723 | 311..487 | 95 | <- | Minus |
| arm_3L | 20508825..20508886 | 249..310 | 95 | <- | Minus |
| arm_3L | 20508961..20509205 | 1..248 | 97 | | Minus |
