Clone UFO05126 Report

Search the DGRC for UFO05126

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:51
Well:26
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptTrp1-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO05126.5prime Sequence

536 bp (447 high quality bases) assembled on 2009-06-30

> UFO05126.5prime
CAGTCGACATGTCGGAAAAGAAGCGAGCCCGTCGCCGCAAGGATGAATAC
ACCGAACCGGGTGCCCAGAAGGTAGACAAGCCGTCAAAGGACGAGAAGAA
CGTGGCCAAGTGGCTGAAGAAGAACGTTAAGACGAAGAAGACCAAATTCC
TGAGCCACATCGTCGAATACTTCACCTCCAGCAAGGCCATCGATGCTCTG
CTAAAGTCCAAATTCACCGAAGGCAGCAATCCGCTTTTCACCACCCGGGA
GCAGGTAATCGAGTTTCTAGACGTGATGCTGGAGCACAAGTTCTTCCATC
GCGCCAAGAAGGTGCCCGTCACTCTGGAGGAGATCAGAGGAAAGTCTGGA
GGCGACAAGAAGGCGGACAAGGAGAAGACCCAAGATAAGGAAAAGGACAA
GGCAAAGGATGAGAAGAAGGATACCGATCCGGAAGGCGATAATGGCCAAG
GAGACGGAGGTGCGTCTGGCAACGAAAAAGAGAAGGAGAAAAAGGAGAAC
AAAAAGCGCAAGATCCTCCTGGACATGCATCCTGAT

UFO05126.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
Trp1-RD 1484 CG4758-RD 121..647 9..535 2605 99.6 Plus
Trp1-RA 2045 CG4758-RA 121..647 9..535 2605 99.6 Plus
Trp1-RC 1532 CG4758-RC 205..695 45..535 2425 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10010737..10011227 45..535 2425 99.6 Plus
2L 23513712 2L 10009501..10009537 9..45 185 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:31:49 has no hits.

UFO05126.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:35:45 Download gff for UFO05126.5prime
Subject Subject Range Query Range Percent Splice Strand
Trp1-RA 116..642 9..536 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:17 Download gff for UFO05126.5prime
Subject Subject Range Query Range Percent Splice Strand
Trp1-RA 121..647 9..536 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:15 Download gff for UFO05126.5prime
Subject Subject Range Query Range Percent Splice Strand
Trp1-RA 121..647 9..536 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:15 Download gff for UFO05126.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10009501..10009536 9..44 100 -> Plus
2L 10010737..10011227 45..536 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:17 Download gff for UFO05126.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10009501..10009536 9..44 100 -> Plus
arm_2L 10010737..10011227 45..536 99   Plus