UFO05128.5prime Sequence
1034 bp (635 high quality bases) assembled on 2009-06-30
> UFO05128.5prime
CAGTCGACATGGAGGACAACGCCGCCCCACCCGCAGCCGCAACAGCCGCG
GGCTGCGATGCCGCCACCCGTCAAAAGAATCCGGAAACCAGTGTCCGGCT
GCTCATCAAGTCGTCCAACCAGCAGTATGAGGATCTCAATGTGGACTCCG
ATCTCTGCTGGACGGTCCAGAGGCTGAAGAAGCACCTATCTCTTATCTAT
CCTGGCAAACCGTTAATCCAGGACCAGAAACTTATTTACTCGGGCAAGCT
ATTAGATGACTCCCAAAAGATATCTGAGGTGATACGCAGCTACAAGGATG
TCTACCAACAGCACCACATATTTCACTTGGTGTGTGCCAGCAAGCAAGTG
ATAAGGCCGGCTGCCAAAGCCCCCACTGTTCCGCAGAAGGATGCGGTTCC
AGCTGGGCCCGAGGTCACTGGGAATGCAAATGAGCTGCGACAACGTCATG
CTCCACATCAGCAGCAGGCACAGCAGGGCAACGCTGGACCACACGTGACG
GGTGACATCGGTTTGGCCAATCCCTGGACACACTTCTGGCAGCAGAGCCA
GGCAGCAGCACCTGCTGCCAATGCCAGTGCCAGTCCCCATGCTTTGTTCC
AGCAGCAGGCGCTCATCTACAACGCCTGGATGCAGCAGGCTTACGCTCAG
TACATGCAGCAGTTGACTCTACGTTTCTACTTTGCCCGGTTCAAACCAAT
CTGGCTTTGCCGGCACCGACTCAAACCCTGTTTGCCCTCAATCCCACTGA
TTTGCTTGGCGAAACTTCGGGAAGGTACAAACAAGTGGGAAGAAGCAGCT
GCTGCCCCAGCGGCACACGTAACCTGCTGATCTCCAAATAATGGGAACCG
CCGCAAAAAAATATTTTCCCAACATTCAGGATGAACCGGAATGCACAACT
GGTGGATAGTTTCTTTAGCCTTACGCGATTGGCCATTTGGGAATGTCCTG
AATTTAACTCCTCACCGCTGCGCTGGTTACAGGTGGGGCTATCGGCGGGG
GGCATTTATTTAATCAAATGGGTGTCCTTAAGAC
UFO05128.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Herp-RC | 2560 | CG14536-RC | 547..1566 | 9..1029 | 4140 | 94.6 | Plus |
| Herp-RA | 2117 | CG14536-RA | 336..1355 | 9..1029 | 4140 | 94.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7798163..7798624 | 673..212 | 2280 | 99.6 | Minus |
| 2L | 23513712 | 2L | 7799309..7799512 | 212..9 | 1005 | 99.5 | Minus |
| 2L | 23513712 | 2L | 7797418..7797732 | 990..675 | 535 | 85 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:37:20 has no hits.
UFO05128.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:35:46 Download gff for
UFO05128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Herp-RA | 328..1319 | 1..994 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:02 Download gff for
UFO05128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Herp-RA | 329..1320 | 1..994 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:12 Download gff for
UFO05128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Herp-RA | 329..1320 | 1..994 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:12 Download gff for
UFO05128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7798168..7798623 | 213..668 | 99 | <- | Minus |
| 2L | 7799309..7799519 | 1..212 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:02 Download gff for
UFO05128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7798168..7798623 | 213..668 | 99 | <- | Minus |
| arm_2L | 7799309..7799519 | 1..212 | 98 | | Minus |
