UFO05131.5prime Sequence
1135 bp (1000 high quality bases) assembled on 2009-06-30
> UFO05131.5prime
CAGTCGACATGGAGACTGCAGCGAACTCGGGCGACTCCAAAAAGCCTTTC
AAAGTCAAGGACGTAACACGCAACATTAAGAAGGCTGTCTGCGCCTCCAG
TCTGGAGGAGATCCGCAGCAAGGTGGCGGAGAAGTTCGAGAAGTGCGACC
ACCTGCCCACCATCCACCTGGACTCCGACGGCACGGAGATCGATGATGAG
GAGTACTTTCGCACCCTCGACGAGAATACGGAACTGGTGGCCGTCTTTCC
CGGAGAACATTGGATCGATCCCACTCACTACGTGACGATAACCACTCCAC
ATGGCAACGAGGCAGGAACTGGAAACGGAGAGCTGAACGGAGGAGGCGAG
GGCGACACCACCGATGCCAACAACTCGGAGTCGGCTCGCATCCGCCAGTT
GGTGGGCCAGCTGCAGAACAACCTCTGCAACGTGTCCGTGATGAACGATG
CCGATCTGGACTCACTCTCCAACATGGATCCCAACTCGTTGGTGGACATC
ACGGGAAAGGAGTTTATGGAGCAGCTCAAGGATGCGGGAAGGCCATTGTG
TGCCAAGCGGAATGCCGAGGATCGTTTAAATCTGCTGAAGCTATTGAAAG
CTGGTGCCATTTTCTGCTCGGAACGTTATCCCGAGGATGCGGAGGCCATT
GACCGGGAGATTGGACGGCAGTTGAACGAGGCGGAGAGTGGACAGATGAG
CACCACAACGACGAGCAACACCCGCACCATCGAGGTGGTGCAGTGCGACA
ATCAAAACACGACGATAACAATTTACGGTGGGCGAGGCCACCACCACTTT
GCGCCACAGCCAGTGGAGCGATGGGATCCTCCCGCTGCCGAAGCGGCTGC
CAATGAGGCCAATGCCAATCCAAATAGAAATCCAAATGCCAACGGCGACA
TCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGTC
ATAATCATAATCATAATCATAATTATAATCACAACTAGCCTAGGAGATCC
TGGTCATGACTAGTGCTTGATTTCCACCAATAAAAACCGCCCGTCGCGCA
CCCGACGTTCTGAACATTCCAATGGGAGTTCTGAGCATTACTGGATCTTA
TTACAGAATCCAGCGCAGTCTGATATCAATACGCC
UFO05131.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:53:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Drep-1-RB | 2153 | CG8357-RB | 252..1143 | 8..902 | 4400 | 99.7 | Plus |
| Drep-1-RA | 2153 | CG8357-RA | 252..1143 | 8..902 | 4400 | 99.7 | Plus |
| Drep-3-RA | 1799 | CG8364-RA | 649..765 | 165..281 | 180 | 78 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:53:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12048803..12049162 | 540..902 | 1665 | 99.2 | Plus |
| 2R | 25286936 | 2R | 12048475..12048747 | 270..542 | 1365 | 100 | Plus |
| 2R | 25286936 | 2R | 12047976..12048191 | 54..269 | 1080 | 100 | Plus |
| 2R | 25286936 | 2R | 12044863..12044910 | 8..55 | 240 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 21:53:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 33..69 | 943..979 | 113 | 78.4 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7071..7107 | 943..979 | 113 | 78.4 | Plus |
| blood | 7410 | blood BLOOD 7410bp | 2904..2944 | 945..987 | 111 | 76.7 | Plus |
UFO05131.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:35:47 Download gff for
UFO05131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rep1-RA | 244..1146 | 1..909 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:36 Download gff for
UFO05131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drep-1-RA | 246..1148 | 1..909 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:50 Download gff for
UFO05131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Drep-1-RA | 246..1148 | 1..909 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:50 Download gff for
UFO05131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12044857..12044908 | 1..53 | 92 | -> | Plus |
| 2R | 12047976..12048191 | 54..269 | 100 | -> | Plus |
| 2R | 12048475..12048746 | 270..541 | 100 | -> | Plus |
| 2R | 12048805..12049167 | 542..909 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:36 Download gff for
UFO05131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7932362..7932413 | 1..53 | 92 | -> | Plus |
| arm_2R | 7935481..7935696 | 54..269 | 100 | -> | Plus |
| arm_2R | 7935980..7936251 | 270..541 | 100 | -> | Plus |
| arm_2R | 7936310..7936672 | 542..909 | 98 | == | Plus |
