UFO05135.5prime Sequence
1076 bp (947 high quality bases) assembled on 2009-06-30
> UFO05135.5prime
CAGTCGACATGATCTTAAAGGAGGAGCACCCACACCAGAGCATCGAAACT
GCCGCAAATGCGGCAAGGCAGGCGCAGGTCCGCTGGCGAATGGCGCATCT
TAAGGCACTCAGCCGCACTCGAACACCAGCGCACGGCAATTGCTGCGGTC
GCGTCGTCAGTAAAAATCACTTTTTCAAGCACAGTCGCGCGTTTCTGTGG
TTCCTGCTGTGCAACTTAGTGATGAACGCGGACGCATTCGCCCACTCCCA
GCTGCTCATTAACGTCCAAAATCAGGGCGGCGAGGTGATCCAGGAGAGTA
TTACCTCCAACATTGGCGAGGACCTGATAACGCTGGAGTTTCAGAAGACC
GACGGAACGCTCATCACCCAGGTCATCGACTTTCGCAATGAGGTTCAAAT
CCTCAAGGCTCTGGTTCTCGGCGAGGAGGAGCGTGGCCAGAGCCAGTACC
AGGTCATGTGCTTCGCAACCAAGTTCAACAAGGGCGACTTCATCTCCTCG
GCGGCAATGGCCAAGCTGCGCCAGAAGAATCCGCACACCATCCGCACTCC
CGAGGAGGACAAGGGCCGTGAGACCTTCACCATGAGCAGCTGGGTACAGC
TCAACCGCTCGCTGCCCATCACCAGACATCTGCAGGGACTCTGCGCCGAG
GCCATGGACGCCACCTATGTCCGGGATGTGGACCTTAAAGCTTGGGCGGA
GCTACCAGGCTCCTCGATTTCCAGCCTGAGGCCGCCACGGAAAAGTTCCC
GGACACGCTCTCGACGCGCTGCAACGAGGTGAGCAGCCTGTGGGCGCCCT
GCCTGTGCAACCTGGAGACCTGCATCGGCTGGTATCCCTGCGGGCTCAAG
TACTGCAAGGGCAAGGAGTCGCCCGGAGCGGACTCGTCGGCGCCCAGCAG
CAAGCACAGCCGACGAATTATCCGCTGCGGCATCAAGACCTGCGGCAAGT
GCACACAGTTCACCTATTATGTGCGGCAGAAACACACAGTGCCCTCTTGG
GAAGGAAGCAAGCTTTCTAGACCAATCCGTTTGGCGCCGCGGGCCCCAGT
TAGTGTCATAATCATAATTCATAATC
UFO05135.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| oaf-RD | 3223 | CG9884-RD | 76..1060 | 9..993 | 4745 | 99.1 | Plus |
| oaf-RC | 1734 | CG9884-RC | 76..1060 | 9..993 | 4745 | 99.1 | Plus |
| oaf-RB | 2831 | CG9884-RB | 76..1060 | 9..993 | 4745 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2495570..2495889 | 390..709 | 1600 | 100 | Plus |
| 2L | 23513712 | 2L | 2493030..2493297 | 9..276 | 1340 | 100 | Plus |
| 2L | 23513712 | 2L | 2496396..2496675 | 706..984 | 1120 | 95.7 | Plus |
| 2L | 23513712 | 2L | 2495371..2495488 | 273..390 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:33:01 has no hits.
UFO05135.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:35:42 Download gff for
UFO05135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oaf-RC | 67..1071 | 1..1007 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:07 Download gff for
UFO05135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oaf-RB | 67..1071 | 1..1007 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:45 Download gff for
UFO05135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oaf-RB | 67..1071 | 1..1007 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:45 Download gff for
UFO05135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2493021..2493296 | 1..275 | 98 | -> | Plus |
| 2L | 2495374..2495487 | 276..389 | 100 | -> | Plus |
| 2L | 2495570..2495888 | 390..708 | 100 | -> | Plus |
| 2L | 2496399..2496694 | 709..1007 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:07 Download gff for
UFO05135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2493021..2493296 | 1..275 | 98 | -> | Plus |
| arm_2L | 2495374..2495487 | 276..389 | 100 | -> | Plus |
| arm_2L | 2495570..2495888 | 390..708 | 100 | -> | Plus |
| arm_2L | 2496399..2496694 | 709..1007 | 95 | | Plus |
