UFO05141.5prime Sequence
1123 bp (984 high quality bases) assembled on 2009-06-30
> UFO05141.5prime
CAGTCGACATGGATTGGATCATCAACGATGAGATGGGCCTGACGGTCGGT
CACGTGGTGGGCTGGGCCGCCGCCTCCGCAATGGTTATTGGGGGCGTGAT
CCCCTACGTGCCCCAATACATTGAGATCAAAAAAACGCAGGACGCGGAGG
GATTCTCTCTGTACGTGTGCCTGGCGCTGCTGGTGGCCAACTCGCTGAGA
ATACTCTTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCC
CCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCC
GACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCA
TCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGG
GCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACT
CACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAG
GGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATG
TGTAGAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAACG
TTTCAGTTTGCTCATGGAAAACGGTGTAACCAGGGTGAACACTATCCCAT
ATCACCAGCTCACGTCTTCATTGCCATACGAATTCCCGGATGACCATTCA
TCAGCGGGCAAGATGTGATAAAGCCGGATAAAACCTGTGCTTATTTTTTC
TTTACCGGCTTTAAAAGGCCGTAATAATCCAGCTGACCGGTCTGTTATAG
GACCATTGGAGCAACTGACTGAATGCCTCAAAATGTCTTTACCAATGCCA
ATGGGAATTACCACGGGGGTAATCAGGAATTTTTTTCTCCAATTTAACTC
TCTTAACTCCGGAAGACCCAAAC
UFO05141.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:53:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13784-RF | 3749 | CG13784-RF | 135..335 | 9..209 | 960 | 98.5 | Plus |
| CG13784-RE | 3724 | CG13784-RE | 110..310 | 9..209 | 960 | 98.5 | Plus |
| CG13784-RD | 5228 | CG13784-RD | 923..1123 | 9..209 | 960 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:53:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7218911..7219111 | 209..9 | 960 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:53:24 has no hits.
UFO05141.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:12:54 Download gff for
UFO05141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13784-RC | 181..390 | 1..209 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:41 Download gff for
UFO05141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13784-RD | 914..1123 | 1..209 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:54 Download gff for
UFO05141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13784-RD | 914..1123 | 1..209 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:54 Download gff for
UFO05141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7218911..7219115 | 1..209 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:41 Download gff for
UFO05141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7218911..7219115 | 1..209 | 96 | | Minus |
