UFO05148.5prime Sequence
1094 bp (938 high quality bases) assembled on 2009-06-30
> UFO05148.5prime
CAGTCGACATGACGGGTTACAAGGTGGCCAATGGCAATGGACACAGCAAT
GGAAATGGAAACACGAAGGGAACAAATGGAACCAATGGACACAGCAATGG
ACACAAGTCGGCGGACTACACCGCCCAGGAGAATCCCACCGGAAATGGAA
AAATCCAATGCGAGCTTACGCACGAAGAGCTAAGAGCCCTTCGGGTTCTC
AACGAAGACACGTATCCCTATGAGGTCATCGAGGAGATCGCCGACTTCAT
TACCAAGGGGTCCGGCATGCGCCCCAAGATCGGCATCATCTGCGGCTCTG
GGCTAGGCTCATTGGCCGATATGATCCAGGACCCGAAGATCTTCGAGTAT
GAGAAGATCCCCAACTTCCCGGTATCTACAGTTGAGGGCCATGCCGGACG
ACTGGTGGTCGGCACACTCGAGGGCGCCACTGTGATGGCGATGCAGGGCA
GGTTCCACTTCTACGAGGGCTATCCGCTGGCCAAGTGCTCAATGCCGGTT
CGCGTGATGAAGCTGTGCGGTGTGGAATACCTGTTCGCCACCAATGCGGC
TGGTGGAATCAATCCACGGTTCGCGGTGGGCGACATCATGCTGATGCATG
ACCATGTCAACATGCTGGGCTTTGCCGGAAATTCTCCGCTCCAGGGACCC
AATGACCCACGCTTCGGACCCCGCTTTCCCGCCCTGGTGAACTCGTACAA
CAAGGACCTAATCAACAAGGCCATCGAGATCGCCAAGGCCATGGGCATAG
AGTCCAACATTCACGTCGGCGTATACTCCTGTCTGGGTGGTCCCAACTAC
GAGACCATCGCCGAGCTGAGGCCCTGCGCATGATGGGCGTTGATGCGTGG
GCATGTCCACCGGTACATGAGGTCATCACTGCACCGGCACTGCGACATGA
AGGTATTCGCCTTCAGCCTCATCACAAATAAGTGGGCCCACCGAGTACAG
CGATAGAAAGAACGATGAGGCCACCACGATGGAGGGTATGGTGGTGGGCA
AAAAACAGGAAAGGCCTGCTTGCGAACTGGTCCTCCCGACTCATCGGGAA
TCCAATTGGCAATCCGGCTTGCCAGACTTTATGACCATTCGTTG
UFO05148.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16758-RB | 1560 | CG16758-RB | 334..1386 | 9..1061 | 4795 | 97.6 | Plus |
| CG16758-RH | 1689 | CG16758-RH | 594..1515 | 140..1061 | 4140 | 97.3 | Plus |
| CG16758-RD | 1488 | CG16758-RD | 462..1314 | 209..1061 | 3795 | 97.1 | Plus |
| CG16758-RH | 1689 | CG16758-RH | 334..464 | 9..139 | 655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2499702..2500467 | 973..207 | 3505 | 98.6 | Minus |
| 3L | 28110227 | 3L | 2503143..2503273 | 139..9 | 655 | 100 | Minus |
| 3L | 28110227 | 3L | 2501068..2501141 | 213..140 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:23:57 has no hits.
UFO05148.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:35:51 Download gff for
UFO05148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16758-RB | 302..1371 | 1..1070 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:18 Download gff for
UFO05148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16758-RB | 324..1393 | 1..1070 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:02 Download gff for
UFO05148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16758-RB | 324..1393 | 1..1070 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:02 Download gff for
UFO05148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2499691..2500462 | 212..984 | 98 | <- | Minus |
| 3L | 2501070..2501141 | 140..211 | 100 | <- | Minus |
| 3L | 2503143..2503277 | 1..139 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:18 Download gff for
UFO05148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2499691..2500462 | 212..984 | 98 | <- | Minus |
| arm_3L | 2501070..2501141 | 140..211 | 100 | <- | Minus |
| arm_3L | 2503143..2503277 | 1..139 | 97 | | Minus |
