UFO05154.5prime Sequence
930 bp (930 high quality bases) assembled on 2009-06-30
> UFO05154.5prime
CAGTCGACATGGCGGAACAAAACGATTCCAACGGAAACTACGACGATGGT
GAAGAGATCACCGAGCCAGAGCAGCTGCGCAAACTGTTCATCGGCGGACT
GGACTACCGCACCACAGATGATGGCCTGAAGGCTCACTTCGAGAAGTGGG
GCAACATTGTCGACGTGGTGGTGATGAAGGATCCCAAGACGAAGCGCTCT
CGCGGCTTCGGTTTCATCACGTACTCCCAGTCGTACATGATCGACAATGC
GCAGAATGCCAGGCCACACAAGATCGATGGACGCACCGTGGAGCCCAAGA
GGGCTGTGCCACGCCAGGAGATCGATTCCCCGAATGCGGGAGCCACGGTA
AAGAAGCTCTTTGTGGGCGGGCTTCGAGACGATCACGATGAAGAGTGCCT
GCGCGAGTACTTCAAGGACTTTGGCCAGATCGTGAGCGTGAACATTGTTT
CCGACAAGGACACCGGCAAGAAGCGCGGCTTCGCCTTCATTGAGTTCGAT
GACTACGATCCCGTTGACAAAATCATCCTTCAGAAGACCCACTCCATCAA
GAACAAGACCCTGGACGTGAAGAAGGCTATTGCCAAGCAGGATATGGATC
GACAGGGCGGAGGTGGCGGACGCGGAGGTCCTCGAGCTGGCGGTCGCGGT
GGTCAGGGTGACCGCGGCCAGGGAGGCGGTGGCTGGGGAGGCCAGAACAG
ACAGAACGGTGGGGGCAACTGGGGGCGGAGCTGGCGGCGGCGGAGGATTC
GGCAACAGCGGCGGTAACTTTTGGAGGCGGTCAGGGCGGCGGCTCTGGCG
GTTGGAATCAGCAAGGCGGAGCGGAGTTGGTCCTTGAATAACCAGGGTGG
CGGCAACGCGGCTGGAACGGTGTGGTGCGGCGGCTACGCGGCGAACAGCA
ATGGCAGCTGGGGCGGAACGGTGTGGAGGT
UFO05154.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hrb87F-RE | 2759 | CG12749-RE | 145..1074 | 9..930 | 4340 | 98.5 | Plus |
| Hrb87F-RD | 1587 | CG12749-RD | 145..1074 | 9..930 | 4340 | 98.5 | Plus |
| Hrb87F-RC | 1810 | CG12749-RC | 145..1074 | 9..930 | 4340 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13658783..13659650 | 916..55 | 3855 | 98.6 | Minus |
| 3R | 32079331 | 3R | 28600724..28601188 | 57..521 | 855 | 78.9 | Plus |
| 3R | 32079331 | 3R | 13660340..13660387 | 56..9 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:33:23 has no hits.
UFO05154.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:13:04 Download gff for
UFO05154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrb87F-RB | 127..1062 | 1..930 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:22 Download gff for
UFO05154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrb87F-RC | 139..1074 | 1..930 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:54 Download gff for
UFO05154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrb87F-RC | 139..1074 | 1..930 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:54 Download gff for
UFO05154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13658767..13659648 | 57..930 | 98 | <- | Minus |
| 3R | 13660340..13660392 | 1..56 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:22 Download gff for
UFO05154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9484489..9485370 | 57..930 | 98 | <- | Minus |
| arm_3R | 9486062..9486114 | 1..56 | 92 | | Minus |
