UFO05157.5prime Sequence
1083 bp (918 high quality bases) assembled on 2009-06-30
> UFO05157.5prime
CAGTCGACATGAATAGCATACACATGAACGCCAATACGCTGAAGTACATC
AGCCTGCTGACGCTGACCCTGCAGAATGCCATCCTGGGCCTCAGCATGCG
CTACGCCCGCACCCGGCCAGGCGACATCTTCCTCAGCTCCACGGCCGTAC
TCATGGCAGAGTTCGCCAAACTGATCACGTGCCTGTTCCTGGTCTTCAAC
GAGGAGGGCAAGGATGCCCAGAAGTTTGTACGCTCGCTGCACAAGACCAT
CATTGCGAATCCCATGGACACGCTGAAGGTGTGTGTCCCCTCGCTGGTCT
ATATCGTTCAGAACAATCTGCTGTACGTCTCTGCGTCCCATTTGGATGCG
GCCACCTACCAGGTGACGTACCAGCTGAAGATTCTCACCACGGCCATGTT
CGCGGTTGTCATTCTGCGCCGCAAGCTGCTGAACACGCAGTGGGGTGCGC
TGCTGCTCCTGGTGATGGGCATCGTCCTGGTGCAGTTGGCCCAAACGGAG
GGTCCGACGAGTGGCTCAGCCGGTGGTGCCGCAGCTGCAGCCACGGCCGC
CTCCTCTGGCGGTGCTCCCGAGCAGAACAGGATGCTCGGACTGTGGGCCG
CACTGGGCGCCTGCTTCCTCTCCGGATTCGCGGGCATCTACTTTTGAGAA
GATCCTCAAGGGTGCCGAGATCTCCGTGTGGATGAGGAATGTGCAGTTGA
GTCTGCTCAGCATTCCCTTCGGCCTGCTCACCTGTTTCGTTAACGACGGC
AGTAGGATCTTCGACCAGGGATTCTTCAAGGGCTACGATCTGTTTGTCTG
GTACCTGGTCCTGCTGCAGCCGGCGGTGGATGATCGTTGCCGTGTGTTCA
AGTACGCGATTAACATTCTCAAGGCTTCGCCACCTCGCTGGCCATCATCA
TCTCGTGCGTGGCCTCCATATACATCTTCGACTTCAATCTCCAGCTGCAG
TTCAGCTTCAGAGCCGGGCTGGTCATCGCCCTCCATCTTTTCCTCTACAG
CTATACGATCCGGCACAGGTCGGCCCAGAGCAATATTGACACGGCTCTGG
TCGGGATAGAGAGAAAGCTACTGTCGCGCCTCC
UFO05157.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:51:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Csat-RC | 2120 | CG2675-RC | 332..1345 | 8..1024 | 4640 | 97.6 | Plus |
| Csat-RA | 2013 | CG2675-RA | 225..1238 | 8..1024 | 4640 | 97.6 | Plus |
| Csat-RB | 2110 | CG2675-RB | 339..1335 | 25..1024 | 4555 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:51:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2701937..2702776 | 980..144 | 3775 | 98 | Minus |
| X | 23542271 | X | 2703288..2703407 | 144..25 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:51:19 has no hits.
UFO05157.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:13:06 Download gff for
UFO05157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csat-RA | 248..1251 | 1..1003 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:21 Download gff for
UFO05157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csat-RA | 217..1220 | 1..1003 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:55 Download gff for
UFO05157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csat-RA | 217..1220 | 1..1003 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:55 Download gff for
UFO05157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2701899..2702775 | 145..1024 | 97 | <- | Minus |
| X | 2703288..2703407 | 25..144 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:21 Download gff for
UFO05157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2595932..2596808 | 145..1024 | 97 | <- | Minus |
| arm_X | 2597321..2597440 | 25..144 | 100 | <- | Minus |
