UFO05159.5prime Sequence
1043 bp (956 high quality bases) assembled on 2009-06-30
> UFO05159.5prime
CAGTCGACATGACCACGAACAGCAGCTTCTTCGATGAACACATCGCCATG
ATATACTCCAACCTGATGGACCAGTACATGCCCGAGTACTTCAAAAGCTT
TGAGTACACGCCATGGGTTTTCTCCCTGCTGGGATCGGTGGTAATTGGAC
TGAGTGGCATATTCCCGCTGATCATCATTCCCACGGAGGAGAAAATGGCT
AAGGAGGGATACAAAGATCGTAAGTCACATGCGTACGAAAAGTATATCAA
TGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTC
ATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCC
TGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCA
ACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGAT
CTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTG
CCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGA
AGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACC
TTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAA
GTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGG
GATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAG
GCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAA
CTGCCGGAAATCGTCGTGGTTTTCACTCCAGAGCGATGAAAACGTTTCAG
TTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACC
AGCTCATCGTCTTTCATTGCCATACGAAATTCCGGATGAGCATTCATCCA
GCCGGGCAGATTGTGAATAAATGCCCGGATAAAACTTGTGCTTAATTTTT
CTTTTACGGTCTTAAAAAGCCGTAATATCCAGCCTGGACGGGT
UFO05159.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zip99C-RJ | 1638 | CG7816-RJ | 314..524 | 9..219 | 1055 | 100 | Plus |
| Zip99C-RI | 1709 | CG7816-RI | 385..595 | 9..219 | 1055 | 100 | Plus |
| Zip99C-RH | 1476 | CG7816-RH | 152..362 | 9..219 | 1055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29865025..29865267 | 251..9 | 1215 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:24:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 222..299 | 814..887 | 119 | 65.4 | Plus |
UFO05159.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:12:57 Download gff for
UFO05159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7816-RE | 200..424 | 1..227 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:22 Download gff for
UFO05159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7816-RH | 143..367 | 1..227 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:06 Download gff for
UFO05159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zip99C-RH | 143..367 | 1..227 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:06 Download gff for
UFO05159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29865025..29865276 | 1..251 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:22 Download gff for
UFO05159.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25690747..25690998 | 1..251 | 98 | | Minus |
