UFO05161.5prime Sequence
982 bp (900 high quality bases) assembled on 2009-06-30
> UFO05161.5prime
CAGTCGACATGAAACTGAGCGTGAGCGCGTATCGGGCGCATGCATCCGCA
CACAAGAAGATCCTCTCCAGCGGCTATCACTCACAGCTCAACTACGGCAG
CACTGGAGCGGCAGCGGCATCCTCCTCGTCGTCGGGGGCCACTGCAACGG
GCCTATATACGATGGAAGCGCACGAGCACGAAGCGGGCAAGTTTGTCAAG
GATGTGGCCCGTCAGGTGCACGACTGCAACAGCGACACGGATGTCATCAG
TCCCACGGGCACCAGTATCTCCGGTGGCGGAGGAGGCGGCGGAGCAGGCG
GTGCCGGCGGATCCGGTGGTGCTGGCGGACACAGCGACGGTGGCTATCAC
AAGCGGCACCACCACAAGATGGTCCGCGATGACGACAACAACAGTGCGGC
GCACTCATCGGACAGCAAGAGTCCCAGCCAGCGATCCGGCAGCTCGTCGC
TAACCAGTGGGCAACTGCACCACTGCGGCTGCCCCACCACCACTAGTTTA
AGGTATACTGAGAGGGATAGACTTATACTGACGCCGGCACAACCGCATCA
ACATCCGCATACGCATCCGCATCCGTATCCGCATCCGCACCAGGCCCGTC
AGCGGCGCCAGGTGCGCCTCCATGTGAACAGTCCGTCCTCCGACCAGAGC
GCCAGCACGCCGGTGGGTCCCAGGCCATTGCCAGCGATGAAGACCCTCTC
GTCGTTCATCAGCGAGCATCCCGAGGAGCTTGTGGCAGCGGAGGATCAGT
CCCGGAGTGGCGCCTTCGCAACCTCCTCGGCATCCGCATCCGCAGCCGCC
ACTGCCAATGCCTCCAATGCCAGCAGCAGACAACGAAGTGAAAGAGCCTG
CGAGCCGTTGATTGGCCTACTACTGCTCCCTGCGGCGCATCAAGGAGGGA
CGTTGCCCACCCACCAAGTCCCACCTTTTCAGGGTTCCGTAATTGCGGAT
TCCCGCGGTTTTGGTAGCGTTAACGCAAGCTA
UFO05161.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cngl-RF | 5515 | CG43395-RF | 2250..3206 | 9..974 | 4490 | 98.2 | Plus |
| Cngl-RE | 11745 | CG43395-RE | 2250..2674 | 9..433 | 2125 | 100 | Plus |
| Cngl-RD | 11700 | CG43395-RD | 2250..2674 | 9..433 | 2125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15408066..15408574 | 947..433 | 2160 | 97.3 | Minus |
| X | 23542271 | X | 15410832..15411104 | 433..161 | 1365 | 100 | Minus |
| X | 23542271 | X | 15419963..15420115 | 161..9 | 765 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:24:13 has no hits.
UFO05161.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:13:12 Download gff for
UFO05161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18210-RA | 1343..2306 | 1..978 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:26 Download gff for
UFO05161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cngl-RF | 2212..3175 | 1..978 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:09 Download gff for
UFO05161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cngl-RF | 2246..3209 | 1..978 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:09 Download gff for
UFO05161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15408037..15408573 | 434..981 | 96 | <- | Minus |
| X | 15410832..15411103 | 162..433 | 100 | <- | Minus |
| X | 15419963..15420119 | 1..161 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:26 Download gff for
UFO05161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15302070..15302606 | 434..981 | 96 | <- | Minus |
| arm_X | 15304865..15305136 | 162..433 | 100 | <- | Minus |
| arm_X | 15313996..15314152 | 1..161 | 97 | | Minus |
