UFO05163.5prime Sequence
1094 bp (966 high quality bases) assembled on 2009-06-30
> UFO05163.5prime
CAGTCGACATGAGACTTCGTTTGCAAGTCCTGGTGGCCCTGTTAACCTGC
TCGTCCATTTCCGTCTCACTGGCCTACAAACCGGTGGTCATACTCCATGG
AATTCTATCAGGAGCCGAATCGATGGCCTCTCTGGTCCGGGAAATCGAAG
AGTTTCATCCTGGCACTATCGTCTACAACTGCGACAAGTTCAATGGATGG
TACAGCTTGGAGAACGCCTGGCGACAGGTCGATCAGGTTAGGGATTATCT
CAACGAGGTGGGCAAACTGCATCCAGAGGGCATCATTGTGCTGGGATACT
CACAAGGAGGCCTTTTGGCCCGGGCGGCCATCCAAAGTCTGCCCGAGCAC
AATGTGAAGACCTTTATATCTCTATCCTCGCCACAGGCGGGGCAATACGG
CACTAGCTTCTTGCATCTAATCTTTCCCGACTTGGCGGCCAAGACAGCCT
TCGAATTGTTCTACTCGCGCGTGGGACAGCACACCTCGGTTGGTGGCTAC
TGGAACGATCCGCAGAGGCAGGATCTCTACCTGAAGTACAGCGAATTCCT
GCCACTGATCAATAATGAGAAGAAGACCTCCAACTCCACATCTTTTAAGA
TGGGAATGGTGCGTCTAAATAAGTTGGTAATGATCGGCGGACCCAACGAC
GATGTGATTACTCCGTGGCAATCGAGCCACTTTGGTTACTTTGACGAGAA
TATGGATGTGATTCCATTTATTAGGCGACCGATTTTCACCAGCGACTCCA
TTGGCATCAAGACGCTTCAGGAGGCCGGCAAGCTTATCATTGTGGTCAAA
CCCCATGTTCATCATCTTGCCTGGCACACGCGAAGGGATGTCATCACGAA
GTGATATTTCCATATCTGGACGCAAGCTTTCTAGACTATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATATCTTAATCATATCATATCTAATACCAC
TAGCCTAGGAGATCCTGGTACTGACAGTGCTTGAATCTCACCATAAAAAA
CGCCCGGGGGACCGAGGGTTTCGAAAATCCTCATGGATCTGGAGGCTTTT
GGGTTTTATCAGAGATCAAGTAGCTCAATTATATTTGCCCGGCC
UFO05163.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:17:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ppt2-RA | 1191 | CG4851-RA | 75..938 | 9..871 | 4280 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:17:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11281133..11281406 | 403..676 | 1370 | 100 | Plus |
| 2L | 23513712 | 2L | 11281470..11281667 | 675..871 | 925 | 99 | Plus |
| 2L | 23513712 | 2L | 11280615..11280759 | 151..295 | 725 | 100 | Plus |
| 2L | 23513712 | 2L | 11280372..11280515 | 9..152 | 720 | 100 | Plus |
| 2L | 23513712 | 2L | 11280820..11280928 | 294..402 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:17:42 has no hits.
UFO05163.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:13:14 Download gff for
UFO05163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppt2-RA | 53..926 | 1..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:02:58 Download gff for
UFO05163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppt2-RA | 69..942 | 1..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:10 Download gff for
UFO05163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppt2-RA | 69..942 | 1..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:10 Download gff for
UFO05163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11280366..11280515 | 1..152 | 97 | -> | Plus |
| 2L | 11280617..11280758 | 153..294 | 100 | -> | Plus |
| 2L | 11280821..11280928 | 295..402 | 100 | -> | Plus |
| 2L | 11281133..11281406 | 403..676 | 100 | -> | Plus |
| 2L | 11281472..11281671 | 677..875 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:02:58 Download gff for
UFO05163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11280366..11280515 | 1..152 | 97 | -> | Plus |
| arm_2L | 11280617..11280758 | 153..294 | 100 | -> | Plus |
| arm_2L | 11280821..11280928 | 295..402 | 100 | -> | Plus |
| arm_2L | 11281133..11281406 | 403..676 | 100 | -> | Plus |
| arm_2L | 11281472..11281671 | 677..875 | 98 | == | Plus |
