UFO05164.5prime Sequence
1106 bp (969 high quality bases) assembled on 2009-06-30
> UFO05164.5prime
CAGTCGACATGAGGCTCAAATCGGGAGTGCTTTCGCTGCTCCTGCTGACC
ACCTTCTTGGCCCTGGGCGAGTGCTTTTGGCCATTTAGCAAATGGCATGG
AAGAAATGATAATCCTTCTGCCCCCCCTGAACCCAAGCTGTCGCCAGTGA
TATTCGTACCCGGTGACGGAGGCTCCCAAATGGATGCTCGGCTAAATAAG
CCCAACTCTCCCTATTTAATTTGCCAAAAGACCCACGATTGGTACAACCT
GTGGCTGGATCTGGAGCAGTTGGTCATCCCCATTGTCTACTGTTGGATAG
ACAATGTCAAGCTGTACTACGACAAGGTCACGAGGACCACCCACAACACT
CCTGGTGTGGAGACGAGGATACCCGGCTGGGGCAATCCCGAGGTGGTCGA
GTGGATCGATCCCACCAAGAACAGCGCCGGAGCCTACTTCAAGGATATAG
CCAATGAGCTGGTGAAACTTGGATATATTCGCAAACAAAATATTCATGGA
GCACCCTATGACTTCCGCAAAGCGCCAAATGAGAACCAACAGTTCTTCAT
CGATCTCAAGCAGCTGGTGGAGGACTCCTATGAGGCCAACAATCAGTCGG
CTGTGACCTTCATCTCGCACAGCATGGGCAGTCTCATGACCCTGGTTTTC
TTGCAGGAGCAAACCCTCCAATGGAAGGCGAAATACGTGAAGCGCATGAT
CAGCCTGGCGGGAGTTTGGGCGGGAAGTTTTAAAGCTGTGAAAGTGTTTG
CCATGGGCGATGATCTCGACTCGTTCGCCCTGAGTGCCAAGATCCTCAAG
GCGGACAGATAACACACCCATCCACGGCCTGTTTGCTGCCCTCGCCACTG
TTTTGGAAGCCAACCGAGTGCTCGCCATGACTCCAAGCAGAAACTATACG
ATGGCACAGCTGGGAGAGTTCTTCAAGACCTCGACTACATGACGGGCCTG
GGAATGCGCAAGACACGATTCGTACAACCGAAACTTCGATCCACCGAATG
TGGACTGCACTGTCTTCTATGGCGAAGCATCGACACGTCGAGAGACTGGC
AGTACAGAAATCGACATATGGGAACGCCCAGTTGATATGGGTTTCGCACG
GACGTA
UFO05164.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:53:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31683-RB | 1823 | CG31683-RB | 437..1538 | 9..1096 | 4975 | 97.8 | Plus |
| CG31683-RA | 2031 | CG31683-RA | 437..1538 | 9..1096 | 4975 | 97.8 | Plus |
| CG18858-RB | 2029 | CG18858-RB | 431..1532 | 9..1096 | 4945 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:53:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20448359..20448873 | 1037..529 | 2090 | 97.3 | Minus |
| 2L | 23513712 | 2L | 20457476..20457994 | 1037..525 | 2080 | 96.9 | Minus |
| 2L | 23513712 | 2L | 20448937..20449314 | 533..156 | 1875 | 99.7 | Minus |
| 2L | 23513712 | 2L | 20458054..20458431 | 533..156 | 1860 | 99.5 | Minus |
| 2L | 23513712 | 2L | 20449381..20449528 | 156..9 | 740 | 100 | Minus |
| 2L | 23513712 | 2L | 20458498..20458645 | 156..9 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:53:45 has no hits.
UFO05164.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:13:15 Download gff for
UFO05164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31683-RA | 437..1519 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:53 Download gff for
UFO05164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31683-RA | 428..1510 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:05 Download gff for
UFO05164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31683-RA | 428..1510 | 1..1072 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:05 Download gff for
UFO05164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20448351..20448873 | 529..1044 | 97 | <- | Minus |
| 2L | 20448942..20449313 | 157..528 | 100 | <- | Minus |
| 2L | 20449381..20449532 | 1..156 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:53 Download gff for
UFO05164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20448351..20448873 | 529..1044 | 97 | <- | Minus |
| arm_2L | 20448942..20449313 | 157..528 | 100 | <- | Minus |
| arm_2L | 20449381..20449532 | 1..156 | 97 | | Minus |
