UFO05167.5prime Sequence
1136 bp (1039 high quality bases) assembled on 2009-06-30
> UFO05167.5prime
CAGTCGACATGGATTCCCTTAACAACGGATGGTTCAGCGAACTGCAGGCC
GATCTCTGGCCCGGTCAGTCATTCTCCCTGAAAGTCAAGGAGGTCATCCA
CAAGGAGAAGTCCCGGTTCCAAGACATCCAGATCGTTGAAACCGAAACCT
ATGGACGGTGCCTAATTCTGGACGGAATCATTCAGTGCACGGCCAGGGAT
GAGTTCTCGTACCAGGAGATGATATCTTTCCTGCCGCTCTGCGCCCATCC
CAATCCCAAAAAGGTCCTGATCGTGGGCGGTGGCGATGGCGGCGTTGCTC
GCGAGGTGGTAAAGCATCCACTGGTCGAGGAAGTGCATCAGGTGGAAATC
GACGACCGTGTCGTCGAGCTGTCCAAGCAATATCTCCCAGCGATGGCCTG
TGGTTTCGCCAACGAGAAGTTGAAGCTTACCATTGGCGATGGATTCGACT
ATATGAAGAAACACAAGAACGAATTTGATGTCATCATCACCGACAGCTCG
GATCCCATTGGTCCGGCAGTGAGCCTGTTTCAGGAAAGCTACTACGAGCT
AATGAAACACGCGCTGAAGGATGACGGAATCGTGTGCTCCCAGGGCGGTA
GCTTCTGGCTGGACCTGGACTACATCAAGAAGACCATGTCCGGCTGCAAG
GAGCACTTTGCTAAGGTGGCCTATGCCGTCACCTCCGTTCCGTCCTATCC
CTGCGGCCACATTGGCTTCGTCATGGGCTCCCTGAACAAAAACCAGGACT
TCGCTACTCCCAAGCTTGGAAAGTCCGAAATCGATTCTATAGACCTAAGG
TACTACTCCTCCGAGGTTCACTCCGCCGCCTTTGCCTTGCCTCGATGGGT
GCAGAAGCACTTTTACGAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGC
GGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCAC
ACTAGCCTAGAAATCCTGGTCATGACTGATTGCTTGGAATTCTCCACCAA
TAAAAAACGCCCGGCGCCACCGAGCGTTCTGAACAAATCCAGATGGGTTC
TGAAGGTCATTACTGATCCTATCCATCGAGTCCAGCGAGCTCGAAATCAA
TACGCCCCGCCCTGCCACTCATCCGAGAACTGTTGT
UFO05167.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:17:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SpdS-RC | 995 | CG8327-RC | 51..911 | 9..869 | 4305 | 100 | Plus |
| SpdS-RA | 1511 | CG8327-RA | 81..941 | 9..869 | 4305 | 100 | Plus |
| SpdS-RB | 1189 | CG8327-RB | 379..1105 | 143..869 | 3635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:17:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9632377..9633103 | 143..869 | 3635 | 100 | Plus |
| 3R | 32079331 | 3R | 9631721..9631854 | 9..142 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:17:54 has no hits.
UFO05167.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:13:18 Download gff for
UFO05167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SpdS-RA | 63..933 | 9..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:03:08 Download gff for
UFO05167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SpdS-RA | 81..951 | 9..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:16 Download gff for
UFO05167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SpdS-RA | 81..951 | 9..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:16 Download gff for
UFO05167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9631721..9631854 | 9..142 | 100 | -> | Plus |
| 3R | 9632377..9633113 | 143..877 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:03:08 Download gff for
UFO05167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5457443..5457576 | 9..142 | 100 | -> | Plus |
| arm_3R | 5458099..5458835 | 143..877 | 99 | == | Plus |
