UFO05170.5prime Sequence
1089 bp (921 high quality bases) assembled on 2009-06-30
> UFO05170.5prime
CAGTCGACATGAACTCGGCAATCAAGGTGGGGGAGATATTCACGGCCGCC
GGACAGGCGTTCAGCAGACTGGGCGATCTAACCATGCAGCTGCATCCCAA
TGCGGAGTCGCCATCGGGTTCTCAGATCCGCCAGGCGCTGAAGAAGAAGG
CCTTCGAGGACGCCGGCATTCCCGCCAAGCAAGTGCCCGTCCAGCAGGTG
CAACACGTTCTCCAGACGCTGCCACAACAGCAGCCGCAGCAGCCCCTTCA
GCAGCCACCTCCTCAAGTATTCAAGTCACAGCCAATCGTGCAGCACGTAC
AGCTGGTGGCGCAGCCAAAGCAGATCATCCTGCATCCACAGTCTAATACA
ACTACGACGGGCACGACGGTGACTGTTAAGCAGTACCAGCAGATGCAGAA
GGCTGCGGCATTAGCGGCAGCCCAGGCTGCAGCCTCGACGGCCAACAACA
CGCCCACCATCACGGAGAACATCATTATCCAGCAGCCCACTTCGACTACG
GCGACAGTGGTGCAGCAGCCACATATGGTGTCCACCTGCTCGTCGACGCA
GATCGTGGTGCCCGTTGTGTCGGCAGTGTCCACTGTTCCAACAGTACTCT
CGCCCACGGTGGTGATTGCCGACGATGTGGTTAGCACCTCCAATCCTCCA
GCGGCAGCGGCGACAGTAGGATCGCCAGCAGGGGCGCCAGCAGGCTTAAA
GTGCGGACCAGACGTGTCCATGACCCTCAATCGCATCAATGTCCAGGAGA
ACGAGGTGGACGTGGAGGAGTGCCTGCCCGCAGAGGTGGTCAAGCTGGAT
TTTGTCAGCGAGGGAGGTGGCCGGGGCAAGCTTTCTAGACCATTTCGTTT
GGCGCGCGGGGCCCAGGTAAGTGGGTCATAATCATAATCATTAATCATAA
TCATAATCACAACTAACCTAAGGAGATTCCTGTGCATGGACTAGTGGCTT
GGAATCCTCACCAATAAAAACGCCCGGCGGGCAACCGAGCGTCTCTGAAC
ACAATCACGAATGGAGTTCTGAGGTCATTATTGGGATCTATCAACGAGAG
GTCCAAGCGAGATCTCGATACAAATTAACGCCCCGCCCT
UFO05170.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33695-RC | 1430 | CG33695-RC | 92..908 | 8..825 | 4065 | 99.9 | Plus |
| CG33695-RD | 1300 | CG33695-RD | 114..913 | 25..825 | 3980 | 99.9 | Plus |
| CG33695-RE | 1394 | CG33695-RE | 302..1007 | 119..825 | 3510 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11278754..11279460 | 118..825 | 3490 | 99.9 | Plus |
| 2L | 23513712 | 2L | 11278392..11278485 | 25..118 | 470 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:24:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..7028 | 193..499 | 198 | 55.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6939 | 192..322 | 169 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6941 | 218..436 | 163 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2373 | 192..255 | 140 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6827 | 192..258 | 137 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..2860 | 192..265 | 136 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2602 | 213..523 | 135 | 54 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9122..9224 | 155..255 | 132 | 60.2 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 92..194 | 155..255 | 132 | 60.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1067..1108 | 213..254 | 129 | 78.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1091..1168 | 192..268 | 126 | 64.1 | Plus |
UFO05170.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:13:08 Download gff for
UFO05170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33695-RC | 85..913 | 1..833 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:25 Download gff for
UFO05170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33695-RC | 87..915 | 1..833 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:08 Download gff for
UFO05170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33695-RC | 87..915 | 1..833 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:08 Download gff for
UFO05170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11278394..11278485 | 27..118 | 100 | -> | Plus |
| 2L | 11278755..11279467 | 119..833 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:25 Download gff for
UFO05170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11278394..11278485 | 27..118 | 100 | -> | Plus |
| arm_2L | 11278755..11279467 | 119..833 | 99 | == | Plus |
