UFO05171.5prime Sequence
1014 bp (911 high quality bases) assembled on 2009-06-30
> UFO05171.5prime
CAGTCGACATGATAAAAGCGTATATAATTTTGGTGCCTTTGCTGCAGTCA
ATTCTTTTGATTGGCTCCCTTGAAGCGGGCTGTCCTGTTTACCTAACCAT
TTCGCTGACGGGCAAAACCCTGCAGGACACCTTTCTCGAGATCAACTGGG
GCCCGAACTGCTATGGACCACCCGAGTGGGTGGGTATCTACAGCCAGGAT
CCGGCCATCTCCAACTTTCAGCCAGATCTGCGCATCAATGGTATTTTCAA
TATAACCGGCAAAATGCAGACGCCCATCAAGCTGGGCAAGCTTCGTTTTC
CCGGTGGCTGGAACAAAAAAGATAGTAGCGATCAGCCGGCAACGCAATAT
CTCAAGGGCAAGTGCCTGCCACACTATGTGGCCAGCTACAATGGCACCGA
GCTGCTCACGGTGGATTGCCTTAAGATACAGCCCAATTGGATGGGCCAGA
TCAAGGACATCAATCGAATGGCGCTGAAGGATATCTTCCTGCCCGGCACA
CATGCCTCGGCGGCCGTCTTGGGCAGCTCCAGTAAGTCCAATTCGATACT
GGTCAGGGATTACCTGGTGGCCCAGCAGCTCGATGTTTGGTCGCAGCTAG
TCTTTGGCATACGTTATCTCGATTTAAGCATTGGATACAAGAACATGAAC
ACCGAGAATGATGCCGATAATTTCTGGATAGCCAACGAGAATATGCTGAT
TACACCGCTACTCACAGTTCTACGTGATGTTCGTCAGTTTGTTAAAAGAT
CTGGCGAAGTGGTAGTCCTGGATTTTAGTAGTTTTCCCATCGGCTTTACA
AGCATCCAGAGATCTACAGCTCGCTATTTCCGGCTAAATCGCCAGGAGCT
GGGCGATGAGACCTATCGCGGAATGTGGGGCAAGGACGAAAACTGTGCGA
ATCGAAATTTCTGCCAAATACTGCTTTCAAAAAAGCATCTGGTGGAAATA
ATTTTCTCACGCAGGAGCTGTCCCTATCCGACGAGAATCGAACATGTCTG
CCGCGCCTGCACGC
UFO05171.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5895-RA | 1512 | CG5895-RA | 86..1079 | 9..1002 | 4580 | 98 | Plus |
| CG5895-RC | 1415 | CG5895-RC | 54..982 | 74..1002 | 4255 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16035731..16036291 | 74..634 | 2805 | 100 | Plus |
| 3L | 28110227 | 3L | 16036351..16036685 | 634..970 | 1255 | 93.5 | Plus |
| 3L | 28110227 | 3L | 16035570..16035636 | 9..75 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:01:04 has no hits.
UFO05171.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:13:09 Download gff for
UFO05171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5895-RA | 81..1089 | 6..1014 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:14 Download gff for
UFO05171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5895-RA | 83..1091 | 6..1014 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:46 Download gff for
UFO05171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5895-RA | 83..1091 | 6..1014 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:46 Download gff for
UFO05171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16035567..16035636 | 6..75 | 98 | -> | Plus |
| 3L | 16035733..16036291 | 76..634 | 100 | -> | Plus |
| 3L | 16036352..16036701 | 635..985 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:14 Download gff for
UFO05171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16028667..16028736 | 6..75 | 98 | -> | Plus |
| arm_3L | 16028833..16029391 | 76..634 | 100 | -> | Plus |
| arm_3L | 16029452..16029801 | 635..985 | 94 | -> | Plus |
