UFO05172.5prime Sequence
1053 bp (954 high quality bases) assembled on 2009-06-30
> UFO05172.5prime
CAGTCGACATGGCCAGCCCCGTGGAACTGCTAAGCCTCTCCAATCCCGTC
TTCAAGAGTTTCACCTTTTGGGTCGGAGTTTTGGTGATCAAAATGCTGCT
GATGAGCCTTCTGACAGCCATCCAGCGTTTCAAGACGAAGACCTTCGCCA
ACCCCGAGGACCTGATGTCCCCCAAGCTGAAGGTCAAGTTCGACGATCCG
AACGTGGAGCGTGTGCGCCGTGCCCACCGCAACGACCTGGAGAACATCCT
GCCCTTCTTCGCCATCGGTCTGCTCTACGTCCTGACTGATCCGGCCGCCT
TTCTGGCCATCAACCTGTTCCGCGCCGTGGGCATCGCCCGCATCGTCCAC
ACACTGGTCTACGCCGTGGTCGTGGTGCCCCAGCCTTCCCGTGCCCTCGC
CTTCTTCGTGGCCTTGGGCGCCACCGTCTACATGGCCCTGCAGGTCATCG
CCTCGGCCGCCTTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAA
ACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAG
GTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATT
ACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATT
CTGCCGACATGGAAAGCCATCACAACGGCATGATGAACCTGAATCGCCAG
CGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAA
CGGGGGCGAAGAGTTGTCCATATTGGCCACGTTTAAATCAAACTGGTGAA
ACTCACCCAGGGATTGCTGAGACGAAAAACATATCTCATAACCCTTAGGG
AATAGGCAGGTTTCACGTAACACGCCAATCTTGCAATATATTGGTTACAA
CTGCGAAATCGTCCTGGCATTCCTCTCAAGCCGATGAAACCGTTCGTTGC
TCA
UFO05172.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mgstl-RA | 660 | CG1742-RA | 101..556 | 9..464 | 2280 | 100 | Plus |
| Mgstl-RC | 951 | CG1742-RC | 524..847 | 141..464 | 1620 | 100 | Plus |
| Mgstl-RB | 591 | CG1742-RB | 164..487 | 141..464 | 1620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22226213..22226668 | 9..464 | 2040 | 96.5 | Plus |
| X | 23542271 | X | 21043678..21044003 | 139..464 | 1630 | 100 | Plus |
| X | 23542271 | X | 21043170..21043301 | 9..140 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:33:34 has no hits.
UFO05172.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:13:10 Download gff for
UFO05172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mgstl-RA | 93..559 | 1..470 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:29 Download gff for
UFO05172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mgstl-RA | 95..561 | 1..470 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:00 Download gff for
UFO05172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mgstl-RA | 95..561 | 1..470 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:00 Download gff for
UFO05172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22226207..22226674 | 1..470 | 94 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:29 Download gff for
UFO05172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22226207..22226674 | 1..470 | 94 | <- | Plus |
