UFO05174.5prime Sequence
1133 bp (1004 high quality bases) assembled on 2009-06-30
> UFO05174.5prime
CAGTCGACATGGATTGTAATCCAAGGTTGCAGGTTGGCCAGCAATTATTC
GAATTTTTTACCAAGCCGGAAAAGCCGGATGAGTCTGGTGGCGATGTAGC
AGCTCCGTTGCTCTTGAAGAAATTCGGCAAGTTGATCCGTTACAACAACG
ATGATCTGACCGAGCAGGGTGACTTGACTTTGGCGGCCATCCCGCGTTAC
TGGCAAAAATATTTAAAAAGCCAGGGTCTGAAGCTGCGCATCGATGGCGA
CGAACTGCTCCCCAGCCCGGTGGACCGCCTGGAGTTGATGGAGCATTCAC
GCAAGTGGCGTTTCCCGCTCGCCGAAATCACTGTGCTGAACAAGGAACGC
TACTCTCTGCGTTTCCAGCGCCATCCGATTATTGCACATGTGCTTAACTC
TGTGCTCACGCTGCGCGGCGATTACGGCCGTTCGGCAAATAACAACCAAT
CGCGCACCATATGCTTGCAGTTGCAAGCCGTTGTCGGAGCCGTCGATGGC
GGGCAGGACTTGCGCCACTATCGCTTGCAGCAGCTATACAAGATACTGCT
GCGCCTGGTTGACTACTCGTCTTGGCGCCTCGTGGAGCCGAATGACCGCC
AGAAGGACACCATCTGTGTGACTGTCGAGCTGGAGAAATGCTGCAACGGC
AAGCAGCCCGTGGAACATGTGTGCCTCACATGCGGTCCTGTTTTGGAGCC
GATAAATAAGGGCGCCAGCTCATTGACTGTTGACGAGTACTTAAAGCTGC
GCTGCCAGCACATGGAGCTGATGGCCACGCAGCGCTCCGGAATGTGTCCG
GTACCAATGAGTAGCCTTGATACGCTGACGAAGCGTCTTGCGGCCGCTGC
CGTGATTGTGGATCTCTTGTGGTGCGCCACTCCAGCGCCGTGAGTGTGGT
GCGCAATGGAGTTGGCATTTGCAAGGCCGCTTCTACATCTTTGTACATTC
AGCACGTCTGGAGGCGCTGCTGGCGCAATTTAATTATTGAAGTTACATTG
TGCTTATGAAAACTGCCACCTGCTGGATGAGATCGATCTCACGCGTTCTA
GAGAAGGATGGTTGACTGGGGGTTGAATTTATGCACCTTCTTACCTTCGG
AGCTAATGGATCAATGATCATTGGACCAGGTCA
UFO05174.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8097-RB | 1903 | CG8097-RB | 304..1409 | 9..1110 | 5020 | 97.8 | Plus |
| CG8097-RA | 1672 | CG8097-RA | 304..1409 | 9..1110 | 5020 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15583462..15584199 | 9..746 | 3690 | 100 | Plus |
| X | 23542271 | X | 15584324..15584640 | 746..1060 | 1010 | 92.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:33:51 has no hits.
UFO05174.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:13:21 Download gff for
UFO05174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8097-RA | 293..1416 | 1..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:40 Download gff for
UFO05174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8097-RA | 295..1418 | 1..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:13 Download gff for
UFO05174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8097-RA | 295..1418 | 1..1118 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:13 Download gff for
UFO05174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15583453..15584198 | 1..745 | 99 | -> | Plus |
| X | 15584324..15584643 | 746..1060 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:40 Download gff for
UFO05174.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15477486..15478231 | 1..745 | 99 | -> | Plus |
| arm_X | 15478357..15478676 | 746..1060 | 93 | -> | Plus |
