Clone UFO05179 Report

Search the DGRC for UFO05179

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:51
Well:79
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG6733-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO05179.5prime Sequence

1107 bp (994 high quality bases) assembled on 2009-06-30

> UFO05179.5prime
CAGTCGACATGAGCTCGGAAAAGTGGGAAAACAATGAGGAAATTAAGATT
TTCCGGGAATACTTGCGTATACCAACGGTGCATCCAGATGTTGACTATAC
TGCCTGTGTGGAGTTCCTGAAACGTCAGGCTAGCTCCCTAAATCTTCCTG
TTGAAGTGGTTTATCCTGCTGTTCAAACGAAGCCCGTTGTGATCATCAAG
TGGGAAGGAAGTCAACCCGAACTATCGTCCATTGTTCTCAACTCTCACAC
GGATGTGGTGCCAGTTTTTCGAGAGAAGTGGACCCATGAACCCTTCTCCG
CCGATATTGATGAAGAGGGTAGGATCTTTGCACGGGGTACTCAGGACATG
AAATCGGTGGGCACTCAGTATCTAGGAGCGATTCGCCTGCTGAAAGCTAG
TGGCTTCAAACCAAAAAGGAATTTGTATGTGACCTTTGTTCCCGACGAAG
AGACTGGTGGTCATCTGGGCATGGCGGAGTTTGTTAAGACGGATTACTAC
AAGAAAATGAACGCGGGATTCAGCCTGGACGAAGGCGCCACTAGTGAAAG
TGACGTTCATCATTTGTTCTACGCCGAACGTTTGCGATGGGGACTCAAGC
TGAAAGTCAGTGGAACTTCTGGTCATGGTTCCCTTTTGCTACCCAATACG
GCAGGAGTAAAACTGAACTATCTGGTCAACAAACTGACTGAATTCCGCAC
CTCGCAAGTGGAGAACCTTGCGAGAGATTCCAGCCTCAGCAAGGGCGATG
TGACCACCGTGAATCTCACCCAGTTAAGTGGCGGAGTCCAGAGCAATGTG
GTTCCGCCACTTTTCGAGGCGGTCTTCGACATACGGATTGCCATTACTGT
GAATGTGGTTGCCTTTGAGAAACAGATTCGCGATTGTGCGAGAAGAGTGT
GCATTGAAATTGATTTCTTCCAGAAGAGCCTTATATAGGACCACCAAGCT
GACAATTCCAATCCTACTGGCTAGCTGTCAAAGCGCAATCGATGAGCTTG
GATTGAAGGTCATCCCATCGTTGTCCTGCCGCCACTGACAGTCGTTTCAT
TCCGGAGAGGTACCAGCATGATCTCACCCATTAAACACATGCCGATCATG
ACCCAAC

UFO05179.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6733-RA 1291 CG6733-RA 26..1094 3..1058 4965 98.3 Plus
CG17109-RB 1373 CG17109-RB 44..925 9..892 1325 77.3 Plus
CG17109-RA 1313 CG17109-RA 44..925 9..892 1325 77.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23097907..23098399 100..592 2465 100 Plus
3R 32079331 3R 23098457..23098875 591..998 1610 96.2 Plus
3R 32079331 3R 23099719..23100209 100..590 820 77.8 Plus
3R 32079331 3R 23095888..23096372 105..592 635 75.8 Plus
3R 32079331 3R 23096434..23096726 594..886 475 77.5 Plus
3R 32079331 3R 23097753..23097849 3..99 470 99 Plus
3R 32079331 3R 23100266..23100541 594..869 390 76.1 Plus
3R 32079331 3R 23092616..23092892 607..883 350 75.1 Plus
3R 32079331 3R 23092184..23092479 228..523 325 74 Plus
3R 32079331 3R 10676298..10676362 671..607 190 86.2 Minus
3R 32079331 3R 23091883..23091953 21..91 190 84.5 Plus
3R 32079331 3R 23095733..23095815 9..91 190 81.9 Plus
Blast to na_te.dros performed on 2014-11-28 21:54:08 has no hits.

UFO05179.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:13:25 Download gff for UFO05179.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6733-RA 20..1131 1..1093 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:05 Download gff for UFO05179.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6733-RA 24..1135 1..1093 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:16 Download gff for UFO05179.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6733-RA 24..1135 1..1093 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:16 Download gff for UFO05179.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23097751..23097849 1..99 96 -> Plus
3R 23097907..23098398 100..591 100 -> Plus
3R 23098458..23098875 592..998 96 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:05 Download gff for UFO05179.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18923473..18923571 1..99 96 -> Plus
arm_3R 18923629..18924120 100..591 100 -> Plus
arm_3R 18924180..18924597 592..998 96 -> Plus