UFO05179.5prime Sequence
1107 bp (994 high quality bases) assembled on 2009-06-30
> UFO05179.5prime
CAGTCGACATGAGCTCGGAAAAGTGGGAAAACAATGAGGAAATTAAGATT
TTCCGGGAATACTTGCGTATACCAACGGTGCATCCAGATGTTGACTATAC
TGCCTGTGTGGAGTTCCTGAAACGTCAGGCTAGCTCCCTAAATCTTCCTG
TTGAAGTGGTTTATCCTGCTGTTCAAACGAAGCCCGTTGTGATCATCAAG
TGGGAAGGAAGTCAACCCGAACTATCGTCCATTGTTCTCAACTCTCACAC
GGATGTGGTGCCAGTTTTTCGAGAGAAGTGGACCCATGAACCCTTCTCCG
CCGATATTGATGAAGAGGGTAGGATCTTTGCACGGGGTACTCAGGACATG
AAATCGGTGGGCACTCAGTATCTAGGAGCGATTCGCCTGCTGAAAGCTAG
TGGCTTCAAACCAAAAAGGAATTTGTATGTGACCTTTGTTCCCGACGAAG
AGACTGGTGGTCATCTGGGCATGGCGGAGTTTGTTAAGACGGATTACTAC
AAGAAAATGAACGCGGGATTCAGCCTGGACGAAGGCGCCACTAGTGAAAG
TGACGTTCATCATTTGTTCTACGCCGAACGTTTGCGATGGGGACTCAAGC
TGAAAGTCAGTGGAACTTCTGGTCATGGTTCCCTTTTGCTACCCAATACG
GCAGGAGTAAAACTGAACTATCTGGTCAACAAACTGACTGAATTCCGCAC
CTCGCAAGTGGAGAACCTTGCGAGAGATTCCAGCCTCAGCAAGGGCGATG
TGACCACCGTGAATCTCACCCAGTTAAGTGGCGGAGTCCAGAGCAATGTG
GTTCCGCCACTTTTCGAGGCGGTCTTCGACATACGGATTGCCATTACTGT
GAATGTGGTTGCCTTTGAGAAACAGATTCGCGATTGTGCGAGAAGAGTGT
GCATTGAAATTGATTTCTTCCAGAAGAGCCTTATATAGGACCACCAAGCT
GACAATTCCAATCCTACTGGCTAGCTGTCAAAGCGCAATCGATGAGCTTG
GATTGAAGGTCATCCCATCGTTGTCCTGCCGCCACTGACAGTCGTTTCAT
TCCGGAGAGGTACCAGCATGATCTCACCCATTAAACACATGCCGATCATG
ACCCAAC
UFO05179.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:54:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6733-RA | 1291 | CG6733-RA | 26..1094 | 3..1058 | 4965 | 98.3 | Plus |
CG17109-RB | 1373 | CG17109-RB | 44..925 | 9..892 | 1325 | 77.3 | Plus |
CG17109-RA | 1313 | CG17109-RA | 44..925 | 9..892 | 1325 | 77.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:54:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23097907..23098399 | 100..592 | 2465 | 100 | Plus |
3R | 32079331 | 3R | 23098457..23098875 | 591..998 | 1610 | 96.2 | Plus |
3R | 32079331 | 3R | 23099719..23100209 | 100..590 | 820 | 77.8 | Plus |
3R | 32079331 | 3R | 23095888..23096372 | 105..592 | 635 | 75.8 | Plus |
3R | 32079331 | 3R | 23096434..23096726 | 594..886 | 475 | 77.5 | Plus |
3R | 32079331 | 3R | 23097753..23097849 | 3..99 | 470 | 99 | Plus |
3R | 32079331 | 3R | 23100266..23100541 | 594..869 | 390 | 76.1 | Plus |
3R | 32079331 | 3R | 23092616..23092892 | 607..883 | 350 | 75.1 | Plus |
3R | 32079331 | 3R | 23092184..23092479 | 228..523 | 325 | 74 | Plus |
3R | 32079331 | 3R | 10676298..10676362 | 671..607 | 190 | 86.2 | Minus |
3R | 32079331 | 3R | 23091883..23091953 | 21..91 | 190 | 84.5 | Plus |
3R | 32079331 | 3R | 23095733..23095815 | 9..91 | 190 | 81.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:54:08 has no hits.
UFO05179.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:13:25 Download gff for
UFO05179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6733-RA | 20..1131 | 1..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:05 Download gff for
UFO05179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6733-RA | 24..1135 | 1..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:16 Download gff for
UFO05179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6733-RA | 24..1135 | 1..1093 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:16 Download gff for
UFO05179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23097751..23097849 | 1..99 | 96 | -> | Plus |
3R | 23097907..23098398 | 100..591 | 100 | -> | Plus |
3R | 23098458..23098875 | 592..998 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:05 Download gff for
UFO05179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18923473..18923571 | 1..99 | 96 | -> | Plus |
arm_3R | 18923629..18924120 | 100..591 | 100 | -> | Plus |
arm_3R | 18924180..18924597 | 592..998 | 96 | -> | Plus |