UFO05180.5prime Sequence
1089 bp (973 high quality bases) assembled on 2009-06-30
> UFO05180.5prime
CAGTCGACATGTGGTCCGACACAATATTAATTGTTTTTATATCGGTTTGC
ACCGCCTTCCTGGGCGAAGGTCTTACATGGGTGATGGTTTACCGGACGGA
GAAGTACCAAAAGCTAAAGACCGAGGTGGAAAAGCAGAGCAAAAAGCTGG
AGCGCCGCAAGGAAATCCATGGGGACTCCCTGGACAAAGCGGTAAAGAAG
AAGATCGAGCGCGACGAGGAAAAACTGAAAAACAACAACCGCGATCTCTC
GCTTGTCAAGATGAAGACCATGTTCGCCACGGGATTCGCCTTCACCGCCC
TGTTGAGTATGTTCAACAGCATCTTCGACGGCCGTGTGGTTGCCCAGCTG
CCCTTCACACCAATCTCCTGGATCCAGGGGTTAAGTCACCGAAATTTGTC
CGGTGACGACTATACGGACTGCTCCTTTATATTCCTCTACATCCTGTGCA
CCATGTCCATTCGTCAGAACATCCAAAAGCTTCTGGGTTTTGCCCCATCG
CGCGCCGCAAGCAAGCAGGGTGTAGGTCTGTTTGGTCCTGCTCCAGGCCA
GTTCAAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAA
GTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGG
AGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCG
GCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTA
CTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCC
GCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAGCATTCTGCCGAC
ATGGAAGCCATCACAACGGCATGATGAACCTGAATCGCCAGCGCCATCAG
CACTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAA
GAAGTGTCCAATTGTCACGTTTAATCCAACTGGTGAAACTCACAGGATGG
CTGGAACGAAAACATATTCTCATAACCCTTAAGGAATAGCAGGTTCCGTA
CACGCCAACCTGCAAATTTGGTAACTGCCGATCTCTGAA
UFO05180.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10470-RA | 701 | CG10470-RA | 100..648 | 9..557 | 2745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19049422..19049831 | 148..557 | 2050 | 100 | Plus |
| 2L | 23513712 | 2L | 19049285..19049364 | 68..147 | 400 | 100 | Plus |
| 2L | 23513712 | 2L | 19049175..19049237 | 9..71 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:33:57 has no hits.
UFO05180.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:13:26 Download gff for
UFO05180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10470-RA | 97..650 | 9..565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:45 Download gff for
UFO05180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10470-RA | 100..653 | 9..565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:16 Download gff for
UFO05180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10470-RA | 100..653 | 9..565 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:16 Download gff for
UFO05180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19049422..19049836 | 148..565 | 99 | == | Plus |
| 2L | 19049175..19049235 | 9..69 | 100 | -> | Plus |
| 2L | 19049287..19049364 | 70..147 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:45 Download gff for
UFO05180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19049175..19049235 | 9..69 | 100 | -> | Plus |
| arm_2L | 19049287..19049364 | 70..147 | 100 | -> | Plus |
| arm_2L | 19049422..19049836 | 148..565 | 99 | == | Plus |
