UFO05185.5prime Sequence
1073 bp (976 high quality bases) assembled on 2009-06-30
> UFO05185.5prime
CAGTCGACATGTTCAACACCACAAAAATGGTTTACAGTTATAGAATTTTA
TGGCTTTCCGGCGTTTTACTAGGTCCTATTTTGCTGGCCGCCATTGCGGT
TCAAGGCCAAGAGCCAGCCAGTCCAGTATTTCAAAATCACAAGACGAAGG
AATGGACGAATTTAGATAATATAACATTCTCATTCGATTGCAAGAGGCGT
TCTGTGGGCTTCTATGCCGACATGGAGTACAATTGCCAGATCTTTCACAT
GTGCGACGAGGAGGGCAATCGGATTCCCCATCTGTGCGCCAATGAGACGA
GCTTTAACCAGGAGTACAGAATCTGTGATTGGGACTACAACTTTAACTGC
ACAGAGTCACCCAAATGGTTCTACCTGAACGAACTGACCTATGCCACAGA
TCCGCCAGATGAAGATGACGAGGATTACGCAAGCTTTCTAGACCATTCGT
TTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAAT
CATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATT
CTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCA
GATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAG
CTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTA
ATTCATTAAGCATTCTGCCGACATGGAAAGCCATCACAAACGGCATGATG
AACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATT
TGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTT
AAATCAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAAACAT
ATCTCATAAACCCTTTAGGAAATAGCCCAGGTTTCACGTACACGCCACAT
CTGCGATATATGTGTAGAACTGCGAAATCGTCTGTATTCCCCTCCAAGCG
ATGAAACGTTCAGTTGCTCATGGAAAACGTGTAACCAGGTGACCTTCCCA
TATAACAGCTCACGCTTCATGCT
UFO05185.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ckd-RE | 1145 | CG14959-RE | 555..974 | 9..428 | 2100 | 100 | Plus |
| ckd-RD | 1246 | CG14959-RD | 317..736 | 9..428 | 2100 | 100 | Plus |
| ckd-RC | 1340 | CG14959-RC | 750..1169 | 9..428 | 2100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3267119..3267287 | 71..239 | 845 | 100 | Plus |
| 3L | 28110227 | 3L | 3267422..3267547 | 237..362 | 630 | 100 | Plus |
| 3L | 28110227 | 3L | 3266651..3266716 | 9..74 | 330 | 100 | Plus |
| 3L | 28110227 | 3L | 3267609..3267674 | 363..428 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:17:02 has no hits.
UFO05185.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:13:30 Download gff for
UFO05185.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14959-RC | 741..1179 | 1..437 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:16:45 Download gff for
UFO05185.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ckd-RC | 741..1179 | 1..437 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:40 Download gff for
UFO05185.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ckd-RC | 741..1179 | 1..437 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:40 Download gff for
UFO05185.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3266642..3266714 | 1..72 | 94 | -> | Plus |
| 3L | 3267121..3267287 | 73..239 | 100 | -> | Plus |
| 3L | 3267425..3267547 | 240..362 | 100 | -> | Plus |
| 3L | 3267609..3267674 | 363..428 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:16:45 Download gff for
UFO05185.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3266642..3266714 | 1..72 | 94 | -> | Plus |
| arm_3L | 3267121..3267287 | 73..239 | 100 | -> | Plus |
| arm_3L | 3267425..3267547 | 240..362 | 100 | -> | Plus |
| arm_3L | 3267609..3267674 | 363..428 | 100 | == | Plus |
