UFO05188.5prime Sequence
1105 bp (996 high quality bases) assembled on 2009-06-30
> UFO05188.5prime
CAGTCGACATGTGGACGCAGAGAAATGCAGTTGGCAATTGGCTGTTGGTA
TTAACAGCCGTTATCGGATTTCTAACTTTCATATGGATTCCGCAGACCTC
AGCCGAATGTCAAACGCGATCGATTTACTGCTATGAGTGCGACTCCTGGA
CTGATGCCCGCTGCAAGGATCCTTTCAACTATACAGCCCTGCCAAGGTGG
TGCGACGCATGTGTACGTCACAGTTACAGATCAATTTATTCATGGTCGAT
CACGTGTGCATGGTGGAAGGTTCAGGCAGTGGACGTATGTGCTTTTGTGA
GGAAGATATGTGCAATTCTAGTAAAAATTTACACACTAATGGTTGCCAGC
TGCATCTCATACCCATCGCAGTGGCAGTATCTTGGCGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAA
CAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTC
CAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTA
CTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGG
CATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTA
TAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGC
CACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGA
AAAACATATTCTCATAACCCTTTAGGGAAATAGGCAGGTTTTCACCGTAC
ACGCCACATCTTGCGAATATATGTGTAGAACTGCCGGAAATCGTCGTGTA
TTCACTCCAGAGCGATGAAAACGTTTCAGTTGCTCATGAAACGTGTAACA
GGTGAAACTATCCATATCACAGCTCACGTCTTTCATGCATACGAAATCGA
TGACATCATCAGCCGGCAGATGGAAATAGGCGGATAACCTTGGCCTAATT
CTACG
UFO05188.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qvr-RB | 5055 | CG33472-RB | 725..913 | 9..197 | 945 | 100 | Plus |
| qvr-RB | 5055 | CG33472-RB | 984..1175 | 195..386 | 900 | 97.9 | Plus |
| qvr-RC | 5046 | CG33472-RC | 975..1166 | 195..386 | 900 | 97.9 | Plus |
| qvr-RC | 5046 | CG33472-RC | 725..904 | 9..197 | 455 | 84.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11447533..11447724 | 195..386 | 900 | 97.9 | Plus |
| 2R | 25286936 | 2R | 11446130..11446189 | 55..114 | 300 | 100 | Plus |
| 2R | 25286936 | 2R | 11447156..11447209 | 115..168 | 270 | 100 | Plus |
| 2R | 25286936 | 2R | 11444712..11444760 | 9..57 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:13:26 has no hits.
UFO05188.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:13:32 Download gff for
UFO05188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33472-RA | 697..1084 | 1..390 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:14:17 Download gff for
UFO05188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qvr-RB | 718..912 | 1..196 | 97 | -> | Plus |
| qvr-RB | 986..1178 | 197..390 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:41 Download gff for
UFO05188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qvr-RB | 718..912 | 1..196 | 97 | -> | Plus |
| qvr-RB | 986..1178 | 197..390 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:41 Download gff for
UFO05188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11444705..11444760 | 1..57 | 92 | -> | Plus |
| 2R | 11446133..11446189 | 58..114 | 100 | -> | Plus |
| 2R | 11447156..11447208 | 115..167 | 100 | -> | Plus |
| 2R | 11447270..11447298 | 168..196 | 100 | -> | Plus |
| 2R | 11447535..11447724 | 197..386 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:14:17 Download gff for
UFO05188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7332210..7332265 | 1..57 | 92 | -> | Plus |
| arm_2R | 7333638..7333694 | 58..114 | 100 | -> | Plus |
| arm_2R | 7334661..7334713 | 115..167 | 100 | -> | Plus |
| arm_2R | 7334775..7334803 | 168..196 | 100 | -> | Plus |
| arm_2R | 7335040..7335229 | 197..386 | 97 | == | Plus |
