UFO05190.5prime Sequence
1124 bp (1016 high quality bases) assembled on 2009-06-30
> UFO05190.5prime
CAGTCGACATGCTGAAATATATTCCTTTACTTTTAGTAGCCCAGCTATTA
ATAGTGGCTGCCAAGCCCACAAATCCACAACTCCTAAACTCCGATGATCC
AGTGCAAAGGGAGTTGGAGAGACAGGCCAAGGAGGAGACAGTCCACCTGC
TGAACTCGTTGTTCCGATCACAAATCGCCTATTTCTCCGAGGTGAAGGCC
GCTCTGAATCCCCAGACCAAGCGATTCCAAGATATCAGTCTTTATATAAC
GCGCCTGAGCCAAGCCATTGATGAGCAGGAACTGGACCGAAAGGATGAGC
TGTGGCAGAATATCTTCGAAGAGTTCAAGGACTCTCCACTGCTGATTAAT
CGGCAATCCGAGACAGGACTCACCGACTTGCAATATAAGACACTCCTGAC
CGGCCAGAAGCTGCAGAATATATCCACCAAGTTCGTGAGCGATGTGGCCG
ATTACTTCTGGGAAATGGCCAAGATTAGTGGCAAAGTCGTTGGCAATGGG
ATAGCGAGCCAGAACGAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCG
GGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACA
ACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATA
AAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTC
TGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCA
AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAG
CATTCTGCCGACATGGAAAGCCATCACAAACGGCATGATGAACCTGAATC
GCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGT
GAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACT
GGTGAAACCCACCCAGGGATTGGCTGAGACGAAAAACATATCCTCAATAA
ACCCTTTAGGAAATAGGCCACTTCACCGTAACACGCCACATCTTGGCGAA
TATATGTGTAGAACTGCGAAATCGTCTGATTCACTGGAGCGATGAAACGT
TTCAGTTGCTCATGAAACGGTAAC
UFO05190.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33307-RB | 1832 | CG33307-RB | 42..551 | 9..518 | 2550 | 100 | Plus |
| CG33307-RA | 586 | CG33307-RA | 42..551 | 9..518 | 2550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13841096..13841377 | 323..42 | 1410 | 100 | Minus |
| 2L | 23513712 | 2L | 13840841..13841037 | 518..322 | 985 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:34:13 has no hits.
UFO05190.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:13:33 Download gff for
UFO05190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33307-RA | 23..540 | 1..518 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:56 Download gff for
UFO05190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33307-RA | 34..551 | 1..518 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:25 Download gff for
UFO05190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33307-RA | 34..551 | 1..518 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:25 Download gff for
UFO05190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13840841..13841035 | 324..518 | 100 | <- | Minus |
| 2L | 13841096..13841374 | 45..323 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:56 Download gff for
UFO05190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13840841..13841035 | 324..518 | 100 | <- | Minus |
| arm_2L | 13841096..13841374 | 45..323 | 100 | <- | Minus |
