UFO05193.5prime Sequence
1090 bp (981 high quality bases) assembled on 2009-06-30
> UFO05193.5prime
CAGTCGACATGCCGTCAGCTCCAACACACACTGCCGAGGAGGCACATCTG
CTGGGCACCATGCCCGTTGATCCCATGGATGACATCGAACTGCGCTCCGT
GCAGCTGCAATTCCCCAATGCCCGCGGCTCCATCCTGGAGGCCTGCGAAC
AGCGACGCGTGCCCACAGACAAGGGCGATGTCCACGTGGCCATACAGGGC
GATACGGCCAAGCCGGCCATTATCACCTACCACGATTTGGGCCTCAACTA
CGCCACCAGCTTTGCTGGCTTCTTCAATTTTCCAGTGATGCGAGGTCTGC
TGGAGAACTTCTGTGTTTACCACGTGACTGCTCCTGGCCAGGAGGAGGGT
GCACCCACTTTGCCAGAGGATTACGTCTATCCGACCATGGATGATCTGGC
CGCCCAGCTGCTTTTCGTGCTATCCCACTTTGGCCTAAAGTCGGTGATTG
GTTTCGGCGTTGGTGCCGGGGCGAATATTCTGGCCCGTTTCGCTCACGCC
CATCCGGACAAGGTGGGCGCCCTGTGCCTGATCAATTGCGTGTCCACGCA
GTCGGGCTGGATCGAGTGGGGCTACCAGAGCTTCAATGCCCGCTTCTTGC
GCACCAAGGGCATGACACAGGGCGTGATCGATTATCTGATGTGGCACCAC
TTCGGACGCAATCCGGAGGAGCGCAATCACGACCTGGTGCAGATGTACAA
GCAGCACTTCGAGCGTGGCGTTAATCCGACCAATCTTGCCATGCTGATCA
ACGCGTACATCCATCGTAACGACCTGCATCTGGCACGCACTCCGCCAGGT
ACTCCGGGCAGCGAAACGGCGGCCACCACGCTGAAGATGCCCGGTGATCA
ATATCCACAGGTTCGCTCTCGCCGCACGTCGACGACACGGTGACCTTCAA
TGGCCGTCTAGATCCTACAAACTCATCGTGGATGAAGATTTCCGATTGCG
CTTTGTGCTGGAGGAGCAGCCGGCTTAGCTGGCCGAAGCTTTCTGGCCTT
CTTGCAGGGCGAGGGACTACGCAACGCGCTGTCACGCCAGGAGTTCGCCT
GTGGGAACTAATAACAACCTATCTTCATCTTCTTCGCCAC
UFO05193.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MESK2-RI | 2798 | CG15669-RI | 433..1519 | 9..1089 | 5000 | 98.1 | Plus |
| MESK2-RE | 2619 | CG15669-RE | 822..1834 | 9..1022 | 4895 | 99.1 | Plus |
| MESK2-RD | 2218 | CG15669-RD | 421..1433 | 9..1022 | 4895 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21511404..21511968 | 371..937 | 2735 | 99.6 | Plus |
| 2R | 25286936 | 2R | 21510866..21511060 | 55..249 | 975 | 100 | Plus |
| 2R | 25286936 | 2R | 21511123..21511243 | 250..370 | 605 | 100 | Plus |
| 2R | 25286936 | 2R | 21512091..21512172 | 936..1015 | 250 | 92.7 | Plus |
| 2R | 25286936 | 2R | 21510155..21510201 | 9..55 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:42:21 has no hits.
UFO05193.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:13:36 Download gff for
UFO05193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESK2-RI | 224..1299 | 1..1074 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:07 Download gff for
UFO05193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESK2-RI | 426..1501 | 1..1074 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:15:33 Download gff for
UFO05193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESK2-RI | 426..1501 | 1..1074 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:15:33 Download gff for
UFO05193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21510148..21510201 | 1..55 | 92 | -> | Plus |
| 2R | 21510867..21511060 | 56..249 | 100 | -> | Plus |
| 2R | 21511123..21511243 | 250..370 | 100 | -> | Plus |
| 2R | 21511404..21511968 | 371..937 | 99 | -> | Plus |
| 2R | 21512093..21512177 | 938..1021 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:07 Download gff for
UFO05193.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17398628..17398748 | 250..370 | 100 | -> | Plus |
| arm_2R | 17397653..17397706 | 1..55 | 92 | -> | Plus |
| arm_2R | 17398372..17398565 | 56..249 | 100 | -> | Plus |
| arm_2R | 17398909..17399473 | 371..937 | 99 | -> | Plus |
| arm_2R | 17399598..17399682 | 938..1021 | 91 | | Plus |
