UFO05194.5prime Sequence
1061 bp (955 high quality bases) assembled on 2009-06-30
> UFO05194.5prime
CAGTCGACATGGAAATGGAAAAGTCTGGCAAATTTTCAGATTACCTCTTC
GCCAAAATGGGTCCCCCCACCTCAACTGAGCTGCCTCCGAAGACCACGGA
ATGCAGCGATGCCCCCGTGGAGTTGACCGGTTACCGCAGGTGGCTCTCCG
AGAATCTAATGCTCCTGGTCACCCTTTCCGGAGTTCTCCTTGGTGTGATA
CTAGGACTCTCCTTACGGCCGCTTAATTTACATGGGGACTCCATCATGCT
GATTTCCTATCCTGGCGAACTGTTTATGCGCGTACTCAAGCTGATGATTT
TGCCGCTAGTTATATCGAGCCTTATTGCCGGATCGGCCAGCCTTAACGCC
AAAATGAACGGCAAGATAGCGCTGCGCACGTTGGTTTACTTTGCCAGCAC
TTCGTTCTTTAACGCTGCACTGGGAATCGCTCTCGTTCTGCTCATCCATC
CTGGAAATCCGGATCTGCACAATGCGGACGATCGATCTACAGATCGGCGG
GCAGTTAACCTTCTAGATAGTCTTTTGGATTTGGGCAGGAACGTATTCCC
GGACAACCTGTTTCAGGCCTCCATTCAGCAGGCGCACACCGTCTACTTGC
CCAAGCCGAGTATCCTGCACGTCTTCAACGAAACGATGAATGACACCTTG
GCATCCGGATCGGAGGCCCAACGCTTGTCTGAAGACCTTACGGAGGATGT
GGTGCTGGTGAGGGACATCCAGTACCGCAGTGGAACCAACACCCTGCGCA
TCGTCTTCTTCTGCCTGGTGTTTGGTACTTTTTTGGGAACCATCGGCCAG
AAGGTCAGGTCGTGGTTGACTTCTTTGCCGCCATTTTTGAGCGCCGCTGC
CCTGCCCATTACATTCCGCTGCATGACGAGAAACCCAAGGTGGATCCGCG
ATCACGCGAATTTGTCCTTCCAATCGGATGCAACATCACATGGACGGAAC
GCCCTATATAATCGCAGTGCATCGATATTCATGCCCGATGAGCGCATGGT
CCTGGAATGGAAAGCTCTACGTCCTTCTGACCTCCACGCTGCCTCATGAT
TCGCCACGATT
UFO05194.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eaat2-RC | 3398 | CG3159-RC | 797..1630 | 9..841 | 4115 | 99.6 | Plus |
Eaat2-RD | 3169 | CG3159-RD | 597..1401 | 38..841 | 3970 | 99.6 | Plus |
Eaat2-RA | 3057 | CG3159-RA | 485..1289 | 38..841 | 3970 | 99.6 | Plus |
Eaat2-RC | 3398 | CG3159-RC | 1897..2112 | 842..1045 | 650 | 90.8 | Plus |
Eaat2-RD | 3169 | CG3159-RD | 1668..1883 | 842..1045 | 650 | 90.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 740356..740692 | 539..203 | 1685 | 100 | Minus |
2L | 23513712 | 2L | 739711..740017 | 841..536 | 1470 | 99.3 | Minus |
2L | 23513712 | 2L | 740799..740995 | 205..9 | 970 | 99.5 | Minus |
2L | 23513712 | 2L | 738694..738839 | 982..840 | 375 | 94.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:36:57 has no hits.
UFO05194.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:13:27 Download gff for
UFO05194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eaat2-RB | 774..1847 | 1..1056 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:45 Download gff for
UFO05194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eaat2-RC | 787..1630 | 1..841 | 99 | -- | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:59 Download gff for
UFO05194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eaat2-RC | 787..1630 | 1..841 | 99 | -- | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:59 Download gff for
UFO05194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 739711..740014 | 539..841 | 99 | <- | Minus |
2L | 740357..740690 | 205..538 | 100 | <- | Minus |
2L | 740800..741005 | 1..204 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:45 Download gff for
UFO05194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 739711..740014 | 539..841 | 99 | <- | Minus |
arm_2L | 740357..740690 | 205..538 | 100 | <- | Minus |
arm_2L | 740800..741005 | 1..204 | 97 | | Minus |