UFO05195.5prime Sequence
1089 bp (991 high quality bases) assembled on 2009-06-30
> UFO05195.5prime
CAGTCGACATGGCAACTGCAACCAGCGGCAGTGGACTCCATCTGGAGGCC
ATCGATCGCATCGGCTCCATTCCCCTTGTGGAATCCAGTGTGAAGCGGGT
GGAGACCATCTACGATAAGGTGAAGAACAACAATAGGCTATTCTCATGGT
ATTTTGAGACGGCGGAGGCCACCATTTCGGCCGCCTACGAAACCATCCAG
CCGGCGGTCAAGCTCTTCGAGCCATCCATTCAGCGCCTGGACAACGTGAT
GTGCAAAAGCCTGGACATTCTGGAGCAGCGCATACCACTGGTCTATCTGC
CGCCCGAAATGATGTACTGGAACACCAAGGAGTACATGTCCGATCACCTG
GTGCGTCCGGTTCTGAAACGCGCCGATTCTGTCAAGCAAATCGGTAATGC
TGTCCTCGAGAGTCCACTTACCACTTATGCAGCCGAGCGCATTGATGGCG
CTTTCACAGTCGGCGATAAGTTCGTGGACAAGTACCTGGTGCCCATCCAA
ACAGATCAGGATCAGACCGATGGCCCACAGGAGGATGATAACGAGGCCGT
GCCGGACGAGAGGGGCGCCATCAAGGCGATCCATCATGGTCAACGCTTCT
CCCGCAAACTGAAGCGCCGCCTTACCCAAAGAACCATCGCAGAGGCTCGC
GCCCTCAAAAAGCAGAGCAAGGAGGCGATCCACGTGCTCTTCTATGCCGC
AGAATTGATTGCCACCGATCCCAAGCAGGCCGTTCAAAAGGCCAAGGAAC
TGTGGGTCTATCTCAGTGCAGATGAACCCGAAAATCAAGCGAGGCCCGCC
ACTCTGGAGCAGTTGATTGTGCTACTGACCCGCGAATCGGCTAGGCGTGT
GGTTCATCTAGTGAACTTCAGTGCTCATGTGCAGCCAACATACCAGAAAC
CTGGCGCACACGACACAGAGGTTGCCCACCATATATCTATATCACCACGC
ATCATCACCATCTCACGCTGGACAGTTAAACATCTTCAAAGAAGAGCTGA
TCTCCTTTTCAAGCGCATGCTTGGCGTTCTATGGTAGCTTCAGGACTGAC
CATGCCTACTGGGCGGTGTAGCTTCTAATCCGACCATGA
UFO05195.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lsd-1-RD | 1432 | CG10374-RD | 76..1140 | 9..1059 | 4845 | 97.9 | Plus |
| Lsd-1-RC | 1813 | CG10374-RC | 457..1521 | 9..1059 | 4845 | 97.9 | Plus |
| Lsd-1-RB | 1501 | CG10374-RB | 148..1209 | 12..1059 | 4830 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23764385..23764684 | 12..311 | 1500 | 100 | Plus |
| 3R | 32079331 | 3R | 23764748..23764960 | 311..523 | 1065 | 100 | Plus |
| 3R | 32079331 | 3R | 23765511..23765696 | 522..707 | 930 | 100 | Plus |
| 3R | 32079331 | 3R | 23765875..23766063 | 707..894 | 895 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:56:00 has no hits.
UFO05195.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:13:29 Download gff for
UFO05195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lsd-1-RC | 452..1525 | 1..1062 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:42 Download gff for
UFO05195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lsd-1-RC | 452..1525 | 1..1062 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:53 Download gff for
UFO05195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lsd-1-RC | 452..1525 | 1..1062 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:53 Download gff for
UFO05195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23765876..23766066 | 708..896 | 98 | -> | Plus |
| 3R | 23764749..23764959 | 312..522 | 100 | -> | Plus |
| 3R | 23765512..23765696 | 523..707 | 100 | -> | Plus |
| 3R | 23764383..23764684 | 8..311 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:42 Download gff for
UFO05195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19590105..19590406 | 8..311 | 99 | -> | Plus |
| arm_3R | 19590471..19590681 | 312..522 | 100 | -> | Plus |
| arm_3R | 19591234..19591418 | 523..707 | 100 | -> | Plus |
| arm_3R | 19591598..19591788 | 708..896 | 98 | -> | Plus |
