UFO05204.5prime Sequence
1120 bp (1036 high quality bases) assembled on 2009-07-06
> UFO05204.5prime
CAGTCGACATGGGTGACCTACAGGCCACCATTGAATTCGTCGTGGAGCTG
CACAAGTTCTTCAATGTGGATTTGTTTCAGCGCGGACTCTACCAGGTGCG
CTGTGGCCTGCGTGTTTCACCCCGCCTACTTGTGCAGGTGGAGACGAGCA
TTCCGGAAGCCAGTGGACCCGGAAAACAGAACGGACATGCCAACGGGGCC
AACGCCACCGACCACGGCAGCAGCGATAGCGAGAGGGGGGAGCTGTCGCC
GGGGGAAGTGCCACGCCTCCACGAATCACCGCCGGGGGGCAGCTGCTCAT
CCGCCTCCGTTATCAACGGCAGCGGCGCCTCGCGCATCTTCCAGATACTC
TACCGCAACGAGGAGGTTCCGCTGCGCGACATCATCCACTTCAGGAGCCA
TCTGCTAGTTGACAGTCGTCACCTGAAGGAGTCCATCGAACGAGCCGAGT
TTTCGCTGCAGTTGGAGCTCTGGTTCGGGGAGCAGAACGGGTCGAGCAGC
CTGAACGGCAATGGAGGCGGCAGTGGGATGGGCAGCTTCTCCGGACCCGC
CAGCTCTGCCCTGACACTGGCCTCCACCAGGAACCTGCAGCTGAACTTTC
ATCCGGGACGTGGCCTTCACTACCATCTGCCTGTGCTGTTCGACTACTTC
CATCTGGCGGCCATCAGTGTGGGCATCCACGCCAGCCTCGTGGCCCTTCA
TCAGCCGTATATCAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAAC
TAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAA
AAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTG
AGGTCATTACTGGATCTATCAACAGAGTCCAAGCGAGCTCGATATCAAAT
TACGCCCCGCCTGCACTCATCGCAGTACTGTGTAATCATAGCATTCTGCC
GACATGAAGCAACCCAACGGCATGATGAACCTGAATCGCAGGCGCATCAA
CACCTTGTCGCCTTTGCGTATAATAATTGCCAATGGGTGAAACGGGGCGA
GAAGTTGTTCCATTTGGCAG
UFO05204.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32333-RC | 6339 | CG32333-RC | 425..1133 | 8..716 | 3545 | 100 | Plus |
| CG32333-RB | 1109 | CG32333-RB | 309..1017 | 8..716 | 3545 | 100 | Plus |
| CG32333-RA | 4876 | CG32333-RA | 309..1016 | 8..715 | 3540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1284787..1285114 | 85..412 | 1625 | 99.7 | Plus |
| 3L | 28110227 | 3L | 1287930..1288239 | 407..716 | 1550 | 100 | Plus |
| 3L | 28110227 | 3L | 1283735..1283812 | 8..85 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:25:11 has no hits.
UFO05204.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:19:03 Download gff for
UFO05204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32333-RB | 289..1000 | 1..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:56 Download gff for
UFO05204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32333-RB | 306..1017 | 1..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:35 Download gff for
UFO05204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32333-RB | 306..1017 | 1..716 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:35 Download gff for
UFO05204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1283732..1283812 | 1..85 | 95 | -> | Plus |
| 3L | 1284788..1285110 | 86..408 | 100 | -> | Plus |
| 3L | 1287932..1288239 | 409..716 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:56 Download gff for
UFO05204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1283732..1283812 | 1..85 | 95 | -> | Plus |
| arm_3L | 1284788..1285110 | 86..408 | 100 | -> | Plus |
| arm_3L | 1287932..1288239 | 409..716 | 100 | == | Plus |
