UFO05205.5prime Sequence
983 bp (977 high quality bases) assembled on 2009-07-06
> UFO05205.5prime
CAGTCGACATGCAGGGATCGGCCACGCTGTTGGTGGTTGCGTTGGCCTTG
CTACTTGGCCCGGCGAGCACGGCCGGGAAATCGGATCCGGGCATGGTGGA
CGTGCTGGTGACCACGGACTTGCCCAGCATCCGGGAGCAGCGTCCGCTGC
TGGCCAACACAAAAATCTACGCGCAGATTAAGGGCTGCACTTCCAATGTG
GAATCGAACCTGACCATTACGTTCCGGCTGACGGAGCACCCCTGCATCTT
TGATGACCGCACGCTGCAGGCCATCGCCCAGAATGCTACCCTGCAGAAGA
ACGCCACCATCAATAACGTCATCACCGAGATCACCAGGACATATCCCTGC
AACGGACTCATCGTCCTGGCGATAAACAAGGACAAGGTGGTCGAAGGATC
AGCGATCCCAACACCGGAGCCAAAGCATCCAATGCTGGAGCACAAGCACC
CACTTTCGCCCACAACGAACCCAATTGCGAGCGTCAAGGAGGATGGCATT
TACGAAATCGAAGTTAACATCGCGGCGGGCCCATCCGCGCAGTTCAGTGC
CGTGGTGCACATAGAGTTCCTGGGCCCACACGGCTTCATCTCGGCCATAG
ATTGGCCATTCCTGCCGTTCTATCTGATCATGTGCATTGTTTACGTGATA
TTTGGAATTATTTGGCTGTTTGTTTCTTTCGCGCAATGGCGGGATCTTTT
GAGAATTCAATTCTGGATCGGTGGCGTCATACTGCTGGGAATGCTAGAGA
AGGCCTTCTTCTACGCCGAATACCAAACGCTGACGAACAAGGGTGTTGCA
GTTCAGCACGCCGAACTGGTGGCCGAGTTTGTGTCCTGTGCGAAGCGCAC
GCTGGCCAGGATGCTGGTCATCATCATGAGTCTCGGCTTTGGCATTGTCA
AACCCCGTTTGGGACCCATGCTGCATCGCGTGATGGGCGTGGGAACCCTC
TACTTTGTGCTGGCCTGCTGTGGAGAGCTACAT
UFO05205.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17660-RA | 2357 | CG17660-RA | 102..1078 | 4..981 | 4835 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1708821..1709105 | 901..617 | 1425 | 100 | Minus |
| 2L | 23513712 | 2L | 1709617..1709812 | 458..263 | 980 | 100 | Minus |
| 2L | 23513712 | 2L | 1709174..1709333 | 617..458 | 800 | 100 | Minus |
| 2L | 23513712 | 2L | 1710207..1710320 | 117..4 | 555 | 99.1 | Minus |
| 2L | 23513712 | 2L | 1709878..1709963 | 263..178 | 430 | 100 | Minus |
| 2L | 23513712 | 2L | 1708599..1708677 | 981..902 | 335 | 97.5 | Minus |
| 2L | 23513712 | 2L | 1710038..1710104 | 182..116 | 320 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:25:27 has no hits.
UFO05205.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:19:04 Download gff for
UFO05205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17660-RA | 92..1073 | 1..983 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:06 Download gff for
UFO05205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17660-RA | 98..1079 | 1..983 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:43 Download gff for
UFO05205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17660-RA | 98..1079 | 1..983 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:43 Download gff for
UFO05205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1709617..1709811 | 264..458 | 100 | <- | Minus |
| 2L | 1709878..1709963 | 178..263 | 100 | <- | Minus |
| 2L | 1710043..1710103 | 117..177 | 100 | <- | Minus |
| 2L | 1710208..1710321 | 1..116 | 97 | | Minus |
| 2L | 1708597..1708677 | 902..983 | 96 | <- | Minus |
| 2L | 1708821..1709104 | 618..901 | 100 | <- | Minus |
| 2L | 1709174..1709332 | 459..617 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:06 Download gff for
UFO05205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1708597..1708677 | 902..983 | 96 | <- | Minus |
| arm_2L | 1708821..1709104 | 618..901 | 100 | <- | Minus |
| arm_2L | 1709174..1709332 | 459..617 | 100 | <- | Minus |
| arm_2L | 1709617..1709811 | 264..458 | 100 | <- | Minus |
| arm_2L | 1709878..1709963 | 178..263 | 100 | <- | Minus |
| arm_2L | 1710043..1710103 | 117..177 | 100 | <- | Minus |
| arm_2L | 1710208..1710321 | 1..116 | 97 | | Minus |
