Clone UFO05208 Report

Search the DGRC for UFO05208

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:52
Well:8
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG2082-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO05208.5prime Sequence

1168 bp (1014 high quality bases) assembled on 2009-07-06

> UFO05208.5prime
CAGTCGACATGTCCATTGCCGATAAACGCGCCTCCTTCGCGCGCCGCGCC
GAATCCCTGGTGGAGCGGAAATACAATATCAGCACAGAGAAATGCGGGGA
TCTGACGGTCATAGTGCAGGGCGACCTGTCACAGCAGGAGAAACGCGCCG
TGTTCATAACGGTTCACGACCTGGGCTGCAACCACAACTCATTCCAGGAG
TTCGTGAGCAGTCCCTGCATGACGGAGATCAAGGAGCGCTCCTGCTTCAT
CCACGTGGACGTGCCGGGGCACGCGGACAACGCGGAGGCCCTGGCTGACG
GCTTTCCGTTTCCCTCGCTCCAGTCCCTGGGCGAGGACCTGGTCACCGTG
CTGGACTACCTGCACGTAAAGTACGTGATCGGCCTAGGCGAGGGTGCCGG
AGCCAATGTCCTGGCCCGCTTCGGACTGGCCCATCCCAGCCGGGTGCTGG
GCCTCATCCTGATCAACGCGACTGGCAGCGCCGCCAGTGTAGTGCAGTCC
TTCAAGAACAAGTTCATTAGCTGGAAGAGCGACGAGGTGGCCCAGTCGGC
TGAGAGCTTTCTGATGTACCACAAATTCGGACATGTTATGGAGCAAATCG
TGGGCGAGAATCCGGACAAGGAGAAGATCGTGGCCGAGTACCAGAAGCGT
CTTCACCGATCCCTAAACAGCAAGAACATCGGTCTCTATGTCAAAGCATT
TATGAATCGCAAGGACCTTACGCTCAAGGGCTGCAAGGTAGATGTCATCC
TGATCACGGGCATGCTCAGCCCCTATGCGTCCATGGTCGAGAAGCTCCAT
CGCGACGTGGAGAAAGGAGAGGGTCACCATTCTGAAGATCGAGCGGGCTG
GCGATGTCCTCGCCGATGCTCCCGGAAAGGTGGCCCAATCCATTCTGCTG
TTCTGCAAGGACAGGGGCTGCTCACGTCGGTGGTGATGCCAGGCGTGATC
GCGGACGCGCCTTCTCACGGCTAGCTCCGATCGCTGGAGGGGGCAACGGA
TCGCGGCGCCTGTCGCGCGCATCTCGATGGGAGGAATTATGAACCAGCCC
AACATCGCCGCTCAGCATCATGAAACAGTGGAAGTGGCCAAGAAGAGCAG
CCTTCTAGAAACATTCGTGGCGTCGGCAGCTAATGACCTATCCTATCCAT
ACCTAATCTAATCCACAC

UFO05208.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG2082-RK 2290 CG2082-RK 327..1416 8..1095 5070 98.4 Plus
CG2082-RB 2280 CG2082-RB 317..1406 8..1095 5070 98.4 Plus
CG2082-RL 2277 CG2082-RL 317..1403 8..1095 4960 97.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5762172..5762500 512..184 1645 100 Minus
3R 32079331 3R 5760630..5760792 870..707 770 99.4 Minus
3R 32079331 3R 5760849..5760963 706..592 575 100 Minus
3R 32079331 3R 5760206..5760371 1030..871 530 96.4 Minus
3R 32079331 3R 5761644..5761719 586..511 380 100 Minus
3R 32079331 3R 5762557..5762622 183..118 330 100 Minus
3R 32079331 3R 5776952..5777012 68..8 305 100 Minus
3R 32079331 3R 5762704..5762756 120..68 265 100 Minus
Blast to na_te.dros performed on 2014-11-28 23:31:56 has no hits.

UFO05208.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:19:06 Download gff for UFO05208.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2082-RB 310..1408 1..1095 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:24 Download gff for UFO05208.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2082-RB 308..1406 1..1095 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:05 Download gff for UFO05208.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2082-RB 308..1406 1..1095 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:05 Download gff for UFO05208.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5760144..5760371 871..1095 92 <- Minus
3R 5760630..5760792 707..870 99 <- Minus
3R 5760849..5760961 594..706 100 <- Minus
3R 5761636..5761717 513..593 95 <- Minus
3R 5762172..5762500 184..512 100 <- Minus
3R 5762557..5762620 120..183 100 <- Minus
3R 5762705..5762755 69..119 100 <- Minus
3R 5776952..5777021 1..68 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:24 Download gff for UFO05208.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1585866..1586093 871..1095 92 <- Minus
arm_3R 1586352..1586514 707..870 99 <- Minus
arm_3R 1586571..1586683 594..706 100 <- Minus
arm_3R 1587358..1587439 513..593 95 <- Minus
arm_3R 1587894..1588222 184..512 100 <- Minus
arm_3R 1588279..1588342 120..183 100 <- Minus
arm_3R 1588427..1588477 69..119 100 <- Minus
arm_3R 1602674..1602743 1..68 95   Minus