UFO05213.5prime Sequence
968 bp (429 high quality bases) assembled on 2009-07-06
> UFO05213.5prime
CAATCGACATGGCGACGAGGAATCTGTTGGCCATCCTTCTTTTGGCCAGC
ATCTGCATGACCCGGGCATATCCGGCTTTGTTGCCCTACATCTACAATCC
TTCCAAGCGCAGCGGTGATACGGCTTTCCCCCAAATCGAGGACGATGTAA
GTGAACTGGACCAGCTGCGGAATGAACCGGGAGCGGTGATGGCCAAGCGT
CAGCACGATGGAAGTACAGCCCGCACCACCACTACCACCAAGGAGAGTGT
CGAGGAGGTCGCCGCTGTTCCCGAGCCAGGTGCACAACCAAATGCAAATA
TTATGCCCGACTTGGATAGGCAGTTGGAGGTGGCGACGCCTCTGATTTCC
ACCACTACAACCACTAGCACGTCGGCCACCACCACTACGGCGACGTCCAA
GGAGGAGGGCGAAAGGTCCCAGCTGGAGGAGCCGAAGACGCATATCAAAA
CCGTAGTGGAGCCGACGGCCCATGCGAAGAACGCCAAAAGCTTCTTGCGT
AGTCCGAATGGTCAATACTCTTCGTTCGACATGGCCCAGTATATTTTTTG
GACTGGAGATGAAACAGCTGTGGTAAAAGCCGTGGAAGAACTGGTTGAGG
GGAAAGTGATCACTCGGGAGAGCGCCCTGAAGTTCCTGCGGACATTCGGC
TGGGAATATAGTTCTTGCTCGGTCCTATGCCAATCGAATTTTCCCCGAAG
AGGTTCGCCAGAATCAATTTAAGCGCCACAGTCCCGGCATTACCACGCCC
CCAGCATTCACTACGACCACGACGACAACAAGCACCACCATTACCACAGA
AAAGCCATTCCCAGCAGTGCACGAATCCGGTTCGGAATCAAGGAATCGAG
CGAGGTGCCGCATGAGTCCTGCCGCGAAGAGCTTCGATAGCCTACACCTT
CTGGAACAACTCAAGTTTTGGACAGCGAGGCTCATTTACGATGTGAATGA
CTATGATGATGGTCGGGC
UFO05213.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9813-RC | 2174 | CG9813-RC | 106..1068 | 8..968 | 4300 | 96.9 | Plus |
| CG9813-RF | 2179 | CG9813-RF | 111..1073 | 8..968 | 4300 | 96.9 | Plus |
| CG9813-RG | 2603 | CG9813-RG | 106..577 | 8..479 | 2300 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13378402..13378784 | 479..97 | 1870 | 99.2 | Minus |
| 3R | 32079331 | 3R | 13374455..13374781 | 931..608 | 1130 | 94.5 | Minus |
| 3R | 32079331 | 3R | 13377533..13377663 | 608..478 | 640 | 99.2 | Minus |
| 3R | 32079331 | 3R | 13379003..13379091 | 96..8 | 430 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:25:42 has no hits.
UFO05213.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:19:09 Download gff for
UFO05213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-RA | 147..624 | 1..479 | 98 | -> | Plus |
| CG9813-RA | 1021..1511 | 480..968 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:15 Download gff for
UFO05213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-RF | 105..1073 | 1..968 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:51 Download gff for
UFO05213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-RF | 105..1073 | 1..968 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:51 Download gff for
UFO05213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13378402..13378784 | 97..479 | 99 | <- | Minus |
| 3R | 13379003..13379094 | 1..96 | 94 | | Minus |
| 3R | 13374343..13374370 | 941..968 | 92 | <- | Minus |
| 3R | 13374447..13374780 | 609..940 | 93 | <- | Minus |
| 3R | 13377533..13377661 | 480..608 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:15 Download gff for
UFO05213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9200065..9200092 | 941..968 | 92 | <- | Minus |
| arm_3R | 9200169..9200502 | 609..940 | 93 | <- | Minus |
| arm_3R | 9203255..9203383 | 480..608 | 99 | <- | Minus |
| arm_3R | 9204124..9204506 | 97..479 | 99 | <- | Minus |
| arm_3R | 9204725..9204816 | 1..96 | 94 | | Minus |
