UFO05217.5prime Sequence
1099 bp (995 high quality bases) assembled on 2009-07-06
> UFO05217.5prime
CAGTCGACATGGTCGAGGAGTTCCTGGAGAAGTTGCCAGAAATCGACACA
CGCTACGAGGATATTGTGCCCATGGAACAAGTGAGCTCGATGGTCTCCAA
TGGCGGTGGCAGCGTGGCCATGCAGCGCGATGATGAGTACAGGAATCGGA
TCATGAAAATACGTAGACTTGCGGACGAGGAAATCAGCGATAAGGCATCA
ACATGCGGAAAATTGCTAATATTTCTTTCCGTGGCTCTTGTGATAATGAC
GCTACCCTTCAGTCTCTTTGTTTGCTTTAAGGTGGTGCAGGAGTACGAGC
GCGCGGTTATCTTCCGTTTGGGTCGTCTTATGCAGGGCGGTGCCAAGGGC
CCAGGTATCTTCTTCATCCTGCCCTGCATTGACTCCTATGCCCGTGTGGA
CTTGCGTACTCGCACATACGATGTGCCACCGCAGGAGGTTCTCACAAAGG
ATAGCGTTACGGTTTCGGTGGATGCAGTGGTTTACTATCGGGTATCAAAT
GCGACCGTCTCTATCGCGAACGTGGAGAATGCTCACCATTCGACCAGGCT
ACTGGCACAGACTACTCTACGAAACACAATGGGAACTCGGCATTTGCATG
AGATACTCAGCGAGCGTATGACGATTTCCGGCACAATGCAGGTTCAACTC
GACGAAGCCACCGATGCCTGGGGCATCAAAGTTGAACGTGTGGAAATCAA
GGACGTGCGTCTGCCGGTGCAACTGCAACGTGCCATGGCCGCGGAGGCAG
AAGCCGCCCGGGAAGCCCGCGCCAAAGTCATCGCCGCCGAAGAGAACAGA
AGGCGTCGAGGGCTCTTCGCGAGGCGTCCGAGTGATTGGCGATTCGCCGG
CTGCCCTCCAACTGCGCTACCTTCAGACACTCAACACCATATCTGCGGAG
AAGACTCGACGATTGTGTCCCGCTGCCCATCGATTTATAACATATTTCCT
GAAGACACGAGCCACACGCAGCAAATGCCCGAGCAGCTGCGGCAGCATGC
ACACAACCGCCGCCATTGCACTGGCGCCGCACAGCGATGGGGTAGCAGCA
CAGCGCGTAACAAAAGCCGCACAGCAGCACAGCAGTCCAATCGGACAGC
UFO05217.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42540-RC | 3863 | CG42540-RC | 730..1828 | 9..1086 | 4900 | 97.6 | Plus |
| CG42540-RH | 3851 | CG42540-RH | 730..1816 | 9..1086 | 4710 | 96.5 | Plus |
| CG42540-RK | 3887 | CG42540-RK | 730..1852 | 9..1086 | 4580 | 95.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4586578..4586785 | 436..643 | 1040 | 100 | Plus |
| 3L | 28110227 | 3L | 4589787..4589967 | 698..876 | 805 | 98.9 | Plus |
| 3L | 28110227 | 3L | 4578759..4578871 | 171..283 | 565 | 100 | Plus |
| 3L | 28110227 | 3L | 4563795..4563896 | 58..159 | 510 | 100 | Plus |
| 3L | 28110227 | 3L | 4580074..4580161 | 352..439 | 440 | 100 | Plus |
| 3L | 28110227 | 3L | 4579445..4579521 | 280..356 | 385 | 100 | Plus |
| 3L | 28110227 | 3L | 4590026..4590160 | 871..997 | 310 | 94.1 | Plus |
| 3L | 28110227 | 3L | 4588066..4588124 | 639..697 | 295 | 100 | Plus |
| 3L | 28110227 | 3L | 4558002..4558053 | 9..60 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:20:25 has no hits.
UFO05217.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:19:12 Download gff for
UFO05217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32245-RA | 728..1792 | 9..1057 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:28:37 Download gff for
UFO05217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42540-RC | 730..1794 | 9..1057 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:19:21 Download gff for
UFO05217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42540-RC | 730..1794 | 9..1057 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:19:21 Download gff for
UFO05217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4558002..4558052 | 9..59 | 100 | -> | Plus |
| 3L | 4563797..4563904 | 60..171 | 93 | -> | Plus |
| 3L | 4578760..4578869 | 172..281 | 100 | -> | Plus |
| 3L | 4579447..4579519 | 282..354 | 100 | -> | Plus |
| 3L | 4580077..4580159 | 355..437 | 100 | -> | Plus |
| 3L | 4586580..4586783 | 438..641 | 100 | -> | Plus |
| 3L | 4588069..4588124 | 642..697 | 100 | -> | Plus |
| 3L | 4589787..4589967 | 698..876 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:28:37 Download gff for
UFO05217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4578760..4578869 | 172..281 | 100 | -> | Plus |
| arm_3L | 4579447..4579519 | 282..354 | 100 | -> | Plus |
| arm_3L | 4580077..4580159 | 355..437 | 100 | -> | Plus |
| arm_3L | 4586580..4586783 | 438..641 | 100 | -> | Plus |
| arm_3L | 4588069..4588124 | 642..697 | 100 | -> | Plus |
| arm_3L | 4589787..4589967 | 698..876 | 98 | -> | Plus |
| arm_3L | 4563797..4563904 | 60..171 | 93 | -> | Plus |
| arm_3L | 4558002..4558052 | 9..59 | 100 | -> | Plus |
