UFO05218.5prime Sequence
1156 bp (1047 high quality bases) assembled on 2009-07-06
> UFO05218.5prime
CAGTCGACATGCTCTTTTACTCCTTCTTCAAGTCGCTGGTGGGCAAGGAA
GTCGTTGTGGAGTTGAAAAACGACCTCAGCATATGTGGCACCCTGCACTC
GGTGGATCAGTACCTGAACATCAAGCTGACGGATATCAGTGTCACAGATC
CGGACAAGTACCCCCACATGCTGAGCGTCAAGAACTGCTTCATCCGTGGC
TCCGTGGTGCGATACGTGCAGCTGCCGGGCGACGAGGTGGACACCCAGCT
GCTCCAGGATGCGGCGCGAAAGGAGGCTGTTGTGAGCACAAGAGCAAGCT
TTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCAT
AATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATG
ACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCG
TTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAAC
AGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCAT
CGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCA
CAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCC
TTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCA
TATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCT
GAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTT
TTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGA
AATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCA
TGGAAAACGGTGTAACAAGGTGAACACTATCCCATATCACCAGCTCACCG
TCTTTCATTGCCATACGAAATTCCGGATGAGCATTCATCAGGGGGCAGAT
GTGAATAAGCCGGATAAAACTTGTGCTTATTTTTCTTTACGTCTTAAAGC
GTAATATCCAGCTGACGACTGGTTATAGGTACATTGAACAACTGACTGAA
TGCCTCAATGTTCTTTACGATGCCATGGCAATATCACGTGATTCCATGGA
CTTTTC
UFO05218.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10418-RA | 437 | CG10418-RA | 40..324 | 9..293 | 1425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12336907..12337123 | 77..293 | 1085 | 100 | Plus |
| 3L | 28110227 | 3L | 12336778..12336846 | 11..79 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:58:02 has no hits.
UFO05218.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:19:13 Download gff for
UFO05218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10418-RA | 32..328 | 1..298 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:08 Download gff for
UFO05218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10418-RA | 32..328 | 1..298 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:36:12 Download gff for
UFO05218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10418-RA | 32..328 | 1..298 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:36:12 Download gff for
UFO05218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12336769..12336846 | 1..79 | 93 | -> | Plus |
| 3L | 12336910..12337123 | 80..293 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:08 Download gff for
UFO05218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12329869..12329946 | 1..79 | 93 | -> | Plus |
| arm_3L | 12330010..12330223 | 80..293 | 100 | == | Plus |
