UFO05220.5prime Sequence
1152 bp (1036 high quality bases) assembled on 2009-07-06
> UFO05220.5prime
CAGTCGACATGTCGTCCAGTGAACGAGTGGCCAAAGTGGTGCTGGTGGAC
ATCGAGGGCACCACCACTTCGATTAGCTTTGTGCACGATGTCCTGTTTCC
CTACGCCAAGCAGAATGTGGAAAAGTTCCTGAGGGATTCGTGGGAAGAAG
ATGATATAAAGCGTATTGTCCAGGATCTACAGCAAGTGCCCCAGTATGCG
GACTACAAGGCCCTGTTAAGTGGTCCACCTACGGAAGTGGATGTAGATCT
GATTGCAGGCTTTGTGCGCTATTTAATTGATCAGGATCTGAAGGTCACGC
CAATGAAAACGCTGCAGGGCTTGATTTGGGCGCAGGGCTACGCTAATGGA
GAGCTGAAGGGCCATGTATACGAAGACGTCCCTGCAGCTTTTGAGGCTTG
GCGTGCTGCTGGCCTCCAGATTGCAGTCTACTCCAGCGGCAGTGTGGCTG
CCCAAAAGCTGATATTCGGTCATAGTTTGGCCGGGAACCTGCAGCCGTAC
TTGAGTGCTTATTTCGACACCCATGTGGGCCACAAACAGGAACAGCAGTC
CTATAAAAACATTGCCAAGCAATTGAAGGAGGACCCGAAGCAGATACTCT
TTCTCACGGATATTCCAGGAGAAGCGGCCGCCGCTCGCTGTGCGGGCTTG
CAAGCCATAATTCTGAAGCGTCCTGGAAACGCCGCCCTAGCAGACGATCA
AAAAACTGGATTCGAGTTGATTCCGGACTTTAAACCACTTCACAACCTGA
AAGTTCCGGTCAATAAATCCCAGGCTGCAAGCTTTCTAGACCATTCGTTT
GGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCA
TAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCT
CACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGA
TGGAGTTCTGAGGTCATTACTGGATCTATCACAGGAGTCAAGCGAGCTCG
ATAATCAAATTACGCCCCGCCCTGCCACTCATCGCCAGTACTGTTGTAAT
CATTAAGCATCCGCCGACATGGGAAGCCTCTACAACGGCATGATGACCTG
ATTCGCCAAGCGGCATCAGACCCTGTCGCCTGCCGGTAATATATTTTGCC
AT
UFO05220.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12173-RA | 867 | CG12173-RA | 79..846 | 9..776 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5256248..5256603 | 364..9 | 1780 | 100 | Minus |
| 3R | 32079331 | 3R | 5255682..5255938 | 621..365 | 1285 | 100 | Minus |
| 3R | 32079331 | 3R | 5255465..5255621 | 776..620 | 785 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:38:18 has no hits.
UFO05220.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:19:14 Download gff for
UFO05220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12173-RA | 42..819 | 1..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:41 Download gff for
UFO05220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12173-RA | 72..846 | 1..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:41 Download gff for
UFO05220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12173-RA | 72..846 | 1..776 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:41 Download gff for
UFO05220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5255465..5255619 | 622..776 | 100 | <- | Minus |
| 3R | 5255682..5255938 | 365..621 | 100 | <- | Minus |
| 3R | 5256248..5256607 | 1..364 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:41 Download gff for
UFO05220.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1081187..1081341 | 622..776 | 100 | <- | Minus |
| arm_3R | 1081404..1081660 | 365..621 | 100 | <- | Minus |
| arm_3R | 1081970..1082329 | 1..364 | 98 | | Minus |
