UFO05229.5prime Sequence
1117 bp (1018 high quality bases) assembled on 2009-07-06
> UFO05229.5prime
CAGTCGACATGCATTTTTTCACCTGCTGTGCATTATTGTTAGTCGTCGTT
ACATTACCAACATGTTTCGTACAAGCAGGTCCCATTAAGGATCAATGCAT
GGCGGCGGCGGGCATCACAGCACAAGATGTTGCGAATCGTCATGAGACCG
ACGACCCTGGCCATAGTGTCAAGTGCTTTTTCCGCTGTTTTCTAGAAAAC
ATTGGCATTATCGCCGATAACCAGATAATACCCGGTGCTTTTGACCGAGT
TCTAGGCCATATAGTTACCGCGGAAGCCGTAGAGCGAATGGAAGCGACGT
GTAATATGATTAAGAGCGAGACATCCCATGACGAGTCTTGTGAATTCGCC
TGGCAAATCTCCGAGTGCTACGAAGGAGTAAGATTATCAGATGTTAAGAA
GGGCCAAAGAACTCGAAATCACAGAGGAGCAAGCTTTCTAGACCATTCGT
TTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAAT
CATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATT
CTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCA
GATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAG
CTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTA
ATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGA
ACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTT
GCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTA
AATCAAAACTGGTGAACTCACCCAGGGATTGGCTGAGACGAAAACATATT
CTCAATAAACCCTTTAGGGAATAGGCAGGTTTCACCGTACACGCACATCT
GCGATATATGTGTAGAACTGCGAAATCGTCGTGTATCACTCCAGAGCGAT
GAAACGTTTCAGTTTGCTCATGAAACGGTGTAACAGGGTGAAACTATCCA
TATCACAGGCTCACGTCTTCATGCCATACGAATTCCGATGACATCTCAGC
GGCAAAAGTGCTAGCGT
UFO05229.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:52:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp56i-RA | 569 | CG30448-RA | 29..448 | 9..428 | 2100 | 100 | Plus |
| Obp56i-RB | 938 | CG30448-RB | 458..817 | 69..428 | 1800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:52:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19868234..19868593 | 69..428 | 1800 | 100 | Plus |
| 2R | 25286936 | 2R | 19868116..19868178 | 9..71 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:52:13 has no hits.
UFO05229.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:19:22 Download gff for
UFO05229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp56i-RA | 1..423 | 9..432 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:56 Download gff for
UFO05229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp56i-RA | 29..453 | 9..433 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:20 Download gff for
UFO05229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp56i-RA | 29..453 | 9..433 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:20 Download gff for
UFO05229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19868116..19868175 | 9..68 | 100 | -> | Plus |
| 2R | 19868234..19868593 | 69..428 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:56 Download gff for
UFO05229.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15755621..15755680 | 9..68 | 100 | -> | Plus |
| arm_2R | 15755739..15756098 | 69..428 | 100 | == | Plus |
