UFO05231.5prime Sequence
1123 bp (1021 high quality bases) assembled on 2009-07-06
> UFO05231.5prime
CAGTCGACATGTTTTACCACATATCGCTGGAGCAAGAGATTCTGCTTCAT
CCACGTTACTTTGGCCCGCAACTGCTGGAGACCGTGAAGCAGAAACTCTA
CTCCGAAGTGGAGGGCACCTGCACGGGAAAGTACGGATTCGTGATAGCGG
TGACGACGATAGATCAAATCGGATCGGGTGTCATCCAGCCGGGCCAGGGA
TTTGTGGTGTATCCGGTCAAGTACAAAGCTATCGTCTTTCGGCCATTTAA
GGGCGAAGTTCTGGACGCAGTGGTCAAGCAGATCAACAAAGTGGGCATGT
TTGCAGAGATCGGCCCGCTGTCCTGCTTCATTTCGCATCATTCTATTCCC
GCCGACATGCAGTTCTGCCCGAATGGGAATCCGCCCTGCTATAAGAGTAA
AGATGAGGATGTGGTTATCTCCGGAGAGGATAAGATTCGGCTGAAGATTG
TGGGCACACGAGTAGATGCCACTGGAATTTTTGCAATTGGCACTTTGATG
GACGACTACTTGGGATTGGTGTCCAACGCAAGCTTTCTAGACCATTCGTT
TGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATC
ATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTC
TCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAG
ATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGC
TCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAA
TTCATTAAGCATTCTGCCGACATGGAAAGCCATCACAAACGGCATGATGA
ACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATATTTG
CCCATGGTGAAACGGGGGCGAAGAGTTGTCCATATTGGCCACGTTTAAAT
CAAACTGGTGAACTCACCCAGGGATTGGCTGAAACGAAAAACATATTCCT
CATAACCCTTTAGGAAATAGCCAGTTCACCGTACCCGCCCCATCTTGCAA
TATATGTGGTAGAACTGCGGAATCGTCTGATTCACCTCGAGCGATGAACG
GTTTCATGTCATGACGGTACAAG
UFO05231.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpb7-RA | 759 | CG31155-RA | 89..607 | 9..527 | 2595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15222703..15223023 | 341..21 | 1605 | 100 | Minus |
3R | 32079331 | 3R | 15222508..15222645 | 479..342 | 690 | 100 | Minus |
3R | 32079331 | 3R | 15222403..15222450 | 527..480 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:35:57 has no hits.
UFO05231.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:19:23 Download gff for
UFO05231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb7-RA | 36..560 | 9..535 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:10 Download gff for
UFO05231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb7-RA | 89..613 | 9..535 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:07:24 Download gff for
UFO05231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb7-RA | 89..613 | 9..535 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:07:24 Download gff for
UFO05231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15222403..15222450 | 480..527 | 100 | <- | Minus |
3R | 15222508..15222645 | 342..479 | 100 | <- | Minus |
3R | 15222703..15223023 | 21..341 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:10 Download gff for
UFO05231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11048125..11048172 | 480..527 | 100 | <- | Minus |
arm_3R | 11048230..11048367 | 342..479 | 100 | <- | Minus |
arm_3R | 11048425..11048745 | 21..341 | 100 | <- | Minus |