UFO05233.5prime Sequence
1105 bp (991 high quality bases) assembled on 2009-07-06
> UFO05233.5prime
CAGTCGACATGTCCAACCAGGAGACCCAGGTTTCCAGCCTGCCGATGCCG
CCGGAGCGGTACATCGCCAATTACACGGACGAGAATATCCGCCGCAACCG
AGCGCCACGCCCACCGCCGCCGCCGGCGCAGCACGAAGTCTATAGCATGT
TTGGCATCCAGTACAACAACGACGAGATGATCCGCAGCTTGGAGTCCCAG
AATATTAAGCGACTGATCCCCATCCATTTCGATCGGCGCAAGGAGCTCAA
GAAGCTTAACCACTCCCTCTTGGTCAACTTCCTAGATCTCATTGACTTTC
TTATCCTGAATCCTGACAGCCCGCGGCGCACGGAAAAGATTGACGATATC
AGTCTGCTGTTCGTCAACATGCATCACCTCCTCAATGAATTTCGCCCACA
TCAGGCGAGGGAAACGCTGCGCGTCATGATGGAAATGCAGAAGCGGCAGC
GCGTTGAGACCGCCGCCCGTTTCCAAAAGCACTTGGAACGTGTGCGCGAG
ATCGTTAATACCGCCTTCTCAGCTCTGCCGGTTCTAGATGATGACGACGA
TAGCGGCGGAGCAAAGATTAAGACGGAGGTGGATCCGTTGGAGGCGAATG
CGGCGGCCAAGAATGATCCCAGTTACCAGCACGATCGCATGTTGTGCAAG
CTTGTGGACGCTATCGAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCG
GGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACA
ACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATA
AAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTC
TGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCA
ATTACGCCCCGCCCTGCACTCATCGCAGTACTGTTGTAATTCATTAAGCA
TTCTGCTGACATGGAGCCATCACAAACGGCATGATGACCTGATCGCCAGC
GGCATCAGCACCTTGTCGCCTGCGTATAATATCTGCATGTGAACGGGGGC
GAGAAGTGTCCAATTGGCCGTTATCAACTGGGAACTCACCAGAATGCTGA
ACGAA
UFO05233.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED7-RA | 901 | CG31390-RA | 100..759 | 9..668 | 3300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10760213..10760544 | 668..337 | 1660 | 100 | Minus |
| 3R | 32079331 | 3R | 10760604..10760933 | 338..9 | 1650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:13:32 has no hits.
UFO05233.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:19:25 Download gff for
UFO05233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED7-RA | 1..666 | 9..675 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:14:22 Download gff for
UFO05233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED7-RA | 96..765 | 1..675 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:45 Download gff for
UFO05233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED7-RA | 96..765 | 1..675 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:45 Download gff for
UFO05233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10760207..10760542 | 339..675 | 99 | <- | Minus |
| 3R | 10760604..10760937 | 1..338 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:14:22 Download gff for
UFO05233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6585929..6586264 | 339..675 | 99 | <- | Minus |
| arm_3R | 6586326..6586659 | 1..338 | 98 | | Minus |
