UFO05235.5prime Sequence
1132 bp (1013 high quality bases) assembled on 2009-07-06
> UFO05235.5prime
CAGTCGACATGAGTTCCCCTCGTGCGGTTCTAGTCAGCCTGTTCCTGATC
TGCAGTCAGGCACTAGCTGACCTTTCTGGTGATGCCCAGACTCTGGAAAA
GTGCCTGCGGCAACTTAGTTCGCCGGAGAGCATTGCTGGCGATCTTCGAA
AGCTGGAACGGTATTCATCTTGGACGCGGGAGGAGGTACCTTGCCTGATG
CGCTGCTTGGCCAGAGAAAAGGGCTGGTTCGACGTGGAGGAAAACAAGTG
GAGGCTCAAGCAACTGACTGAGGACCTGGGCGCCGATGTCTATAACTACT
GCAGATTCGAGCTGCGCCGGATGGGGTCCGATGGCTGCAGCTTCGCCTAT
CGGGGACTCAGGTGCCTGAAGCAGGCCGAGATGCATGCGGGCACCAGCCT
GAGCACACTGCTACAGTGTTCCCGCCAGCTGAACGCCACCAACGTGGAGC
TGCTGCAGTACAGTAAGCTGAAGTCAAAGGAACCTATTCCCTGCCTCTTT
CAGTGCTTTGCGGATGCCATGGGATTCTACGATCCCGATGGAAACTGGCG
GCTGGAAAACTGGAAGCAGGCGTTTGGGCCTTCCGGAAATGAGGATCAGT
CTTCTGGCGCTGACTACAGTGGCTGTCGACTAAGTGGGACTCAGCGGGAG
GTGGCGCTAAGCAAGTGCTCGTGGATGTACCATGAGTACAAATGCTGGGA
GCGAGTAAATGGGAATAAGCTAGTGGAGGACAACGAAGAGCACGCAAGCT
TTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCAT
AATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATG
ACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCG
TTCTGAACAAATCCAGATGGAGTTCTGAGTCATTACTGGATCTATCAACA
GGAGTCCAAGCGAGCTCGATATCAAATACGCCCCGCCCTGCCACCTCATC
GCAGTACTGTGTAATCATAGCATTCTGCCGACTGAGGCATCACAAACGCA
TGATGAACTGATCGCAGCGCATCAGAACCTGGCGCCTGCATAAATTGCAA
TGGAACGTGGCAAAAGTGTTCCAATTTGGGCG
UFO05235.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp83ef-RA | 901 | CG31557-RA | 27..760 | 9..742 | 3670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6109783..6110468 | 742..57 | 3430 | 100 | Minus |
| 3R | 32079331 | 3R | 6110957..6111008 | 60..9 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:03:48 has no hits.
UFO05235.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:19:17 Download gff for
UFO05235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83ef-RA | 4..744 | 1..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:00:58 Download gff for
UFO05235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83ef-RA | 20..760 | 1..742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:06 Download gff for
UFO05235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83ef-RA | 20..760 | 1..742 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:06 Download gff for
UFO05235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6109783..6110465 | 60..742 | 100 | <- | Minus |
| 3R | 6110958..6111015 | 1..59 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:00:58 Download gff for
UFO05235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1935505..1936187 | 60..742 | 100 | <- | Minus |
| arm_3R | 1936680..1936737 | 1..59 | 94 | | Minus |
