UFO05236.5prime Sequence
1078 bp (993 high quality bases) assembled on 2010-12-10
> UFO05236.5prime
CAGTCGACATGAATTCTCTGGCCAGGATCGGGGGTTTTGTGTGCCAGTCC
GTGCAAATAGCCGGCTGCGGGCTGCAGCAGGTGCGCACAAAGTATGCCGA
TTGGAAGATGATTCGCGACGTAAAGCGGCGCAAGTGCGTCAAGGAGAACG
CCGTGGAGCGGCTGCGAGTCAACTCGCTGCGCAAGAACGACATCCTGCCG
CCGGAGCTACGCGAGGTAGCCGACGCCGAGATCGCTGCTTTTCCTCGGGA
CTCATCGCTCGTCCGGGTGAGGGAACGCTGCGCGCTTACGTCACGTCCGC
GCGGAGTTGTCCACAAGTACAGGCTCAGTCGAATCGTGTGGCGCCACCTC
GCCGACTACAATAAGCTGTCCGGCGTCCAGCGCGCCATGTGGGCAAGCTT
TCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATA
ATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGA
CTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGT
TCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACA
GGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATC
GCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGGAAGCCATCA
CAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCC
TTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCA
TATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCT
GAGACGAAAACATATTCTCAATAACCCTTTAGGGAAATAGGCCAGGTTTC
ACGTACACGCCACATCTTGCGAATATATGTGTAGAACTGCCCGGAAATCG
TCGTGGTATCACTCCAGAGCGATGAAACGTTTCAGCTTGCTCATGCAAAC
GGTGTACAAGGTGACACTATCCCATATCACAGCTCACCGTCTTTCATTGC
CATCGAATCGATGAACATTCTCAGGCGC
UFO05236.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS14-RB | 797 | CG32531-RB | 361..746 | 7..392 | 1930 | 100 | Plus |
| mRpS14-RA | 476 | CG32531-RA | 40..425 | 7..392 | 1930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19479433..19479754 | 392..71 | 1610 | 100 | Minus |
| X | 23542271 | X | 19479814..19479878 | 71..7 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:17:39 has no hits.
UFO05236.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-10 11:25:16 Download gff for
UFO05236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS14-RA | 35..429 | 1..398 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:26:11 Download gff for
UFO05236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS14-RA | 35..429 | 1..398 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:55:13 Download gff for
UFO05236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS14-RA | 35..429 | 1..398 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:55:13 Download gff for
UFO05236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19479433..19479753 | 72..392 | 100 | <- | Minus |
| X | 19479814..19479883 | 1..71 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:26:11 Download gff for
UFO05236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19373466..19373786 | 72..392 | 100 | <- | Minus |
| arm_X | 19373847..19373916 | 1..71 | 95 | | Minus |
