UFO05237.5prime Sequence
1124 bp (1030 high quality bases) assembled on 2009-07-06
> UFO05237.5prime
CAGTCGACATGGCAGTGGCATTCTACATACCCGATCAGGCGACTCTGTTG
CGGGAGGCGGAGCAGAAGGAGCAGCAGATCCTTCGCTTGCGGGAGTCACA
GTGGAGATTCCTGGCCACCGTCGTCCTGGAAACCCTGCGCCAGTACACTT
CATGTCATCCGAAGACCGGAAGAAAGTCCGGCAAATATCGCAAGCCATCG
CAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGG
TCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGAT
CCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGG
CAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGG
ATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCC
TGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATG
GAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCA
CCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAG
AAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCA
GGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAAT
AGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGA
AACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTC
AGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCA
CCAGCTCACCGTCTTTCATTGCCATACGAATTCCGGATGAGCATTCATCA
GCGGGCAAGAATGTGAATAAAGGCCGGATAAAACTTGTGCTTATTTTTCT
TACGGTCTTTAAAAGGCCGTAATATCAGCTGACGTCTGTTATAGTACATG
AGCACTGACTGAAATGCTCAAATGTTCTTACGATGCATGGAATATATCAA
CGGTGTATAATCCAGGTGATTTTTTTCATTAGCTCTTAGGTCTGAGATCC
TACTCGAAGCAACTTACGAGTTAT
UFO05237.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rpr-RA | 901 | CG4319-RA | 201..395 | 9..203 | 975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18398041..18398235 | 203..9 | 975 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:44:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 772..839 | 123 | 68.1 | Plus |
UFO05237.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:19:34 Download gff for
UFO05237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rpr-RA | 164..371 | 1..211 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:56 Download gff for
UFO05237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rpr-RA | 196..403 | 1..211 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:16:55 Download gff for
UFO05237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rpr-RA | 196..403 | 1..211 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 21:16:55 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 23:52:56 has no hits.
