UFO05240.5prime Sequence
1125 bp (1026 high quality bases) assembled on 2009-07-06
> UFO05240.5prime
CAGTCGACATGAACTACTTCGCGGTGATCTGCATTTTCTCCTGCATTTGC
CTTTGGCAATTTAGCGATGCTGCCCCCTTTATAAGCGTTCAGTCTAGTTC
ACAATCAAGATCCCAGAAAGTGATGAATGGCATGTTGAGAACCCTATACG
ACTACAGTGTTCAGGATAGTGTGAACGATGCGACTGGGCATTTGATACAA
ACTCACAAAGCAGACTTCAACTCGGATGTCATGAGTCCTGATGAAATAGA
GAGTGTGCGCCAGCAACTGAACATGGCAGCAAGCTTTCTAGACCATTCGT
TTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAAT
CATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATT
CTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCA
GATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAG
CTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTA
ATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGA
ACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTT
GCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTA
AATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATA
TTCTCAATAAACCCTTTAGGGAATAGGCCAGGTTTTCACCGTAACACGCC
ACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTC
ACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGTGTAACA
AGGGTGAACACTATCCCATATCACCAGCTCACCGTCTTTCATTGCCATAC
GAAATTCCGATGAGCATTCATCAGCGGCAAGAATGGTGAATAAAGGCGGA
TAACTTGTGGCTTATTTTTCTTACGTCTTTAAAAGCGTATATCAGCTGAC
GACTGTTAAGTAATGACACTGACTGATGCTCAAGTTCTTACAATGCATGG
ATATCACGGAATCAGAATTTTCCAT
UFO05240.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acp26Ab-RC | 408 | CG9024-RC | 26..295 | 9..278 | 1350 | 100 | Plus |
| Acp26Ab-RB | 504 | CG9024-RB | 26..295 | 9..278 | 1350 | 100 | Plus |
| Acp26Ab-RA | 453 | CG9024-RA | 26..295 | 9..278 | 1350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5892507..5892745 | 278..40 | 1195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:45:09 has no hits.
UFO05240.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:19:36 Download gff for
UFO05240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp26Ab-RB | 22..301 | 1..287 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:03 Download gff for
UFO05240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp26Ab-RA | 22..301 | 1..287 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:17:06 Download gff for
UFO05240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp26Ab-RA | 22..301 | 1..287 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:17:06 Download gff for
UFO05240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5892504..5892745 | 40..283 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:03 Download gff for
UFO05240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5892504..5892745 | 40..283 | 98 | <- | Minus |
