UFO05241.5prime Sequence
1126 bp (1008 high quality bases) assembled on 2009-07-06
> UFO05241.5prime
CAGTCGACATGAAGTGCATCGCCATCGTCTCCACCATCTGCCTGCTGGCC
GCTTTCGTTGCCGCCGATAAGGAGGATAAGATGCTCGGCTCCTCGTACGG
TGGTGGCTACGGCAAGCCCGCCGCTGCTCCGGCTCCATCCTACTCCGCTC
CGGCTGCCGCTCCCCAGGCCTACGCCGCCCCAGCTGCTCCATCCTACGCC
GCCGCTCCGGTCTCGATCCCGGCTCCTCCTTGCCCCAAGAACTACCTGTT
CAGCTGCCAGCCCAACCTGGCCCCAGTGCCATGCAGCGCCCCAGCTCCCA
GCTATGGATCCGCCGGTGCCTACTCGCAGTACGCCCCCGTCTACGCTCCT
CAGCCCATCCAGTGGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGC
CCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACT
AGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAA
AACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGA
GGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAAT
TACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCAT
TCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCA
GCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAA
CGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAATCAAAACTGGTGA
AACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCT
TTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATA
TATGTGTAGAAACTGCCCGGAAATCGTCGTGTATTCACTCCAGAGCGATG
AAAACGTTTCAGTTTGCTCATGGAAAACGGTGTACAGGTGAACACTATCC
CATATCACCAGCTCACGTCTTCATGCCAACGAATTTCCGATGAGCATTCA
TCAAGCGGCAGAATGTGATTACGCGGATAACCTTGTGCTAATTTTTCTTA
CGTCTTAAAGCGTAATCACTGGACGC
UFO05241.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vm34Ca-RA | 491 | CG9271-RA | 45..403 | 7..365 | 1795 | 100 | Plus |
| Vm26Aa-RB | 745 | CG9048-RB | 295..404 | 216..325 | 445 | 93.6 | Plus |
| Vm26Aa-RA | 641 | CG9048-RA | 295..404 | 216..325 | 445 | 93.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13411229..13411587 | 365..7 | 1795 | 100 | Minus |
| 2L | 23513712 | 2L | 5959937..5960046 | 325..216 | 445 | 93.6 | Minus |
| 2L | 23513712 | 2L | 5957403..5957534 | 202..333 | 300 | 81.8 | Plus |
| 2L | 23513712 | 2L | 11171466..11171524 | 276..218 | 205 | 89.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:58:13 has no hits.
UFO05241.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:19:37 Download gff for
UFO05241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vm34Ca-RA | 39..403 | 1..365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:17 Download gff for
UFO05241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vm34Ca-RA | 24..388 | 1..365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:36:19 Download gff for
UFO05241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vm34Ca-RA | 39..403 | 1..365 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 21:36:19 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 23:48:17 has no hits.
